Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d12
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...   125   8e-30
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...   122   6e-29
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   5.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   6.7  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.9  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   8.9  

>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score =  125 bits (301), Expect = 8e-30
 Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
 Frame = +3

Query: 294 DNYMYLIVDKATKEAAIVDPVEPKTVLKAVEEQG----VNLXXXXXXXXXXXXAGGNEDL 461
           +NY YL+    TK  AIVDP EP++V+  ++E+     ++L            AGGNED+
Sbjct: 16  NNYAYLLTCDKTKITAIVDPAEPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGGNEDI 75

Query: 462 IKERPGLIVYGGDDRIGALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFVTAPEEGN 641
           +   P L VYGG +  G +T   +    FK+G + V+ L TPCHT   ICY+V++P +  
Sbjct: 76  LSYFPSLKVYGGKNASG-VTYTPKDKEIFKVGEVQVEALHTPCHTQDSICYYVSSPSK-- 132

Query: 642 DSVVFTGDTLFLGGCGRFFEGTADQMYQSINN 737
              VFTGDTLF  GCGRFFEG A QM  ++N+
Sbjct: 133 -RAVFTGDTLFTSGCGRFFEGDAKQMDYALNH 163


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score =  122 bits (294), Expect = 6e-29
 Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
 Frame = +3

Query: 291 QDNYMYLIVDKATKEAAIVDPVEPKTVL----KAVEEQGVNLXXXXXXXXXXXXAGGNED 458
           QDNY YL++ + T++AAIVDP E   V+    K ++ + ++L            +GGN +
Sbjct: 15  QDNYAYLLLCEETRQAAIVDPAEVNVVMPILKKKLKNKEIDLQAILTTHHHADHSGGNLN 74

Query: 459 LIKERPGLIVYGGDDRIGALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFVTAPEEG 638
           L KE P + +YGG D+ G ++  ++     +IGN+ ++ L TPCHT   IC++       
Sbjct: 75  LKKEFPHVTIYGGSDQNG-VSHVLQDKETLRIGNVQIEALHTPCHTRDSICFYA---HSS 130

Query: 639 NDSVVFTGDTLFLGGCGRFFEGTADQMYQSIN 734
           N+  VFTGDTLF  GCGRFFEGTA +M+ ++N
Sbjct: 131 NEHAVFTGDTLFNAGCGRFFEGTAAEMHIALN 162


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 216 NQREAHSSQEDHQYKNMDVKILPALQDNYMYLIVDKATKE-AAIVDPVEPKTVLKAVEE 389
           +QR+  + +E       D ++L  LQD  M  I+ +A +  AA+++ ++  TV   +E+
Sbjct: 523 SQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEK 581


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/106 (20%), Positives = 39/106 (36%)
 Frame = +3

Query: 441 AGGNEDLIKERPGLIVYGGDDRIGALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFV 620
           A G  +  + +P L+     D +  L  +V    KF +   NV+    P      + YF+
Sbjct: 130 ASGPANYGESKPTLLYTNQRDHLDRLCDQV----KFYLDQCNVEYFVAPYLAMAQLAYFL 185

Query: 621 TAPEEGNDSVVFTGDTLFLGGCGRFFEGTADQMYQSINNSEQPA*P 758
                     ++    L L G  +F   T+     ++  S  P+ P
Sbjct: 186 NGTSSPYIDAIYGSTDLLLFGVKKFI--TSMNTSSNVKISSDPSSP 229


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 106 FIDDVFVGHYKISSGV*SQITDFLLFIYTNYNQ 8
           F D +  GHY   S +   +  F  FI  NYNQ
Sbjct: 305 FFDILLKGHYLNFSLILGSLLVFAGFIVVNYNQ 337


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 114 LFKKTYSMLARFVNSLPSGLSQRITKLYFRALIRNQREAHSSQEDHQ 254
           LFKKTY+++A  V+    GL  ++ K   + L+   R  H  Q++++
Sbjct: 33  LFKKTYNLVAAKVSPKKVGLLNKVCK---KDLLDWPRVKHVYQQNNE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,827
Number of Sequences: 5004
Number of extensions: 55808
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)