Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d12
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348...   159   2e-39
09_04_0738 - 19828852-19828892,19830033-19830156,19830515-198307...    54   9e-08
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686...    44   1e-04
03_01_0296 + 2284385-2285629,2287632-2288594                           29   4.0  
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811...    28   9.3  
02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544     28   9.3  

>03_02_0896 -
           12233706-12233801,12234005-12234181,12234741-12234854,
           12234928-12235006,12235372-12235533,12235957-12236079,
           12236139-12236218
          Length = 276

 Score =  159 bits (387), Expect = 2e-39
 Identities = 85/169 (50%), Positives = 107/169 (63%), Gaps = 15/169 (8%)
 Frame = +3

Query: 270 VKILPA--LQDNYMYL-----------IVDKATKEAAIVDPVEPKTVLKAVEEQGVNLXX 410
           +KI+P   L+DNY YL           IVD++TK AA VDPVEP+ VL A  E GV +  
Sbjct: 1   MKIIPVACLEDNYAYLYPPESILVSCLIVDESTKSAAAVDPVEPEKVLAAAAEVGVRIDC 60

Query: 411 XXXXXXXXXXAGGNEDLIKERPGLIVYGGD-DRIGALTKKVEHNTKFKIG-NLNVQCLFT 584
                     AGGNE + +  PG+ VYGG  D +   T +VE+ TK  +G ++ + CL T
Sbjct: 61  VLTTHHHWDHAGGNEKMAQSVPGIKVYGGSLDNVKGCTDQVENGTKLSLGKDIEILCLHT 120

Query: 585 PCHTTGHICYFVTAPEEGNDSVVFTGDTLFLGGCGRFFEGTADQMYQSI 731
           PCHT GHI Y+VT+ EE  D  VFTGDTLF+ GCGRFFEGTA+QMYQS+
Sbjct: 121 PCHTKGHISYYVTSKEE-EDPAVFTGDTLFIAGCGRFFEGTAEQMYQSL 168


>09_04_0738 -
           19828852-19828892,19830033-19830156,19830515-19830718,
           19831505-19831690,19832098-19832172
          Length = 209

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
 Frame = +3

Query: 261 NMDVKILPALQDNYMYLIVDKATKEAAIVDPVEPKTVLKAVEEQGVNLXXXXXXXXXXXX 440
           ++ ++++P LQDNY Y++ D  T    +VDP E   ++ A+E++  NL            
Sbjct: 82  SLQIELVPCLQDNYAYILHDVDTGTVGVVDPSEATPIINALEKRNQNLTYILNTHHHYDH 141

Query: 441 AGGNEDLIKERPGLIVYGG---DDRIGALTKKVEHNTKFKIGNLNVQCLFTPCHTT 599
            GGN +L K + G  V G     DRI  +   +     +      V  + TP HT+
Sbjct: 142 TGGNLEL-KAKYGAKVIGSAKDRDRIPGIDITLSEGDTWMFAGHQVLVMETPGHTS 196


>01_06_0183 -
           27268190-27268281,27268454-27268478,27268568-27268621,
           27268688-27268747,27269166-27269300,27270106-27270213,
           27270330-27270458,27270845-27270905,27271081-27271112,
           27271161-27271289
          Length = 274

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
 Frame = +3

Query: 342 IVDPVEPKTV---LKAVEEQGVNLXXXXXXXXXXXXAGGNEDLIKERPGLIVYGGDDRIG 512
           ++DPV+ +TV   L  ++E G+ L              G   +  + PG+          
Sbjct: 75  LIDPVD-RTVDRDLNLIKELGLKLVYAMNTHVHADHVTGTGLIKTKLPGVKSVIAKVSKA 133

Query: 513 ALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFV-TAPEEGNDSVVFTGDTLFLGGCG 689
                +EH  K   GNL ++   TP HT G + Y      ++ +  + FTGD L +  CG
Sbjct: 134 KADHFIEHGDKIYFGNLFLEVRSTPGHTAGCVTYVTGEGDDQPSPRMAFTGDALLIRACG 193

Query: 690 R 692
           R
Sbjct: 194 R 194


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 222 REAHSSQEDHQYKNMDVKILPALQDNYMYLIVDKATKEAAIVDPV--EPK 365
           R A   + +H+  N D +      ++Y YLIV  +  E  IVD +  EPK
Sbjct: 182 RVADYMKHEHELSNTDAEAGGFSMEDYKYLIVGDSKLETTIVDGMTYEPK 231


>08_02_1260 -
           25680618-25680677,25680763-25680893,25681085-25681163,
           25681250-25681280,25681358-25681410,25681441-25681511,
           25681610-25681678,25681776-25681889,25683101-25683293
          Length = 266

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 177 QRITKLYFRALIRNQREAHSSQEDH-QYKNMDVKILPALQDNYMYLIVDKATKEAAIVDP 353
           Q I  +   +++ +Q +     + H +Y  MDV+ +   +      ++DK T ++ +V P
Sbjct: 76  QDIVNIDISSVVIDQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMVSP 135

Query: 354 VEP 362
             P
Sbjct: 136 FLP 138


>02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544
          Length = 360

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 102 INFILFKKTYSMLAR-FVNSLPSGLSQRITKLYFRALIRNQREAHSSQEDHQYKNMD 269
           + +++  K  S+ +  F  S+P+ L   +TKL   AL  NQ   H SQE  +  N++
Sbjct: 242 LGYLVNLKNLSLYSNNFTGSIPNCLGN-LTKLTDLALFENQFSGHISQELGKLVNLE 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,062,222
Number of Sequences: 37544
Number of extensions: 344247
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)