Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d09
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    30   0.28 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.49 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.0  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    27   3.5  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    25   8.0  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.0  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 663 FIVPGGRFKEIYYW 704
           F+VPGGRF E+Y W
Sbjct: 277 FVVPGGRFNELYGW 290


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 495  PDDHKENPPFLAKIRDEGFREFAKALNDIWPTLXXRVKPS 614
            PD + E+ PF+ K+   G+ +  KA  D W +L     P+
Sbjct: 1001 PDRYFEDIPFIKKVDAVGYEKKIKATIDTWASLPNAFAPN 1040


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 421 IQRKKTCRNLSLTFLMKPANLKNGNRMTIKKTRLSSPKFVMKVSG 555
           I RK+T  +  L +LM  A  +N +  TI+K  +       K+ G
Sbjct: 456 IARKRTSESRHLHYLMAKAKRENADSKTIRKIAIEMRNVPNKIHG 500


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 444 PAGLLSLDYDSCGPTALGRRTVLRSRLYAFENRRKF 337
           PA   S D   C PT+ G   +L+SR+   E  R+F
Sbjct: 90  PASTSSKDGVVCSPTSTGASQLLKSRVDILEVARQF 125


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 399 LLDRTNHNPTKEDLQEFVVDFFDETSELEEWKPDDHKE 512
           L+D+   N    +  E     F++  +  EW+PD   E
Sbjct: 548 LIDKLEENGLSMERAELPTSVFEDELQRREWRPDQEVE 585


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 286 TVRCFITFKWPDSTPILKLSSIFKC 360
           +VR F T KW D TPI +L  I  C
Sbjct: 142 SVRKFAT-KWIDCTPIRRLDMIVLC 165


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 360 RKDENATLSAFQELLDRTNHNPTKEDLQEFVVDFFDETSELEEWKPDDHKE 512
           RK ++ + S  +  L   N+N  +EDL +  +       E  + KP D ++
Sbjct: 766 RKGQHNSFSYDKSTLFYDNNNNLEEDLPDVNISISSRNEEASKTKPFDDRQ 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,006
Number of Sequences: 5004
Number of extensions: 55731
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)