Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d09
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   6.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   6.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 426 LDYDSCGPTALGRRTVLRSRLYAFENR 346
           +D D C   +L +R ++RSR   +  R
Sbjct: 1   VDKDECDRKSLSQRKIIRSRSRRYSKR 27


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 183 FTYKNKYNNDNNSVTLSTK 127
           + Y N YNN NN+   + K
Sbjct: 92  YNYNNNYNNYNNNYNTNYK 110


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 183 FTYKNKYNNDNNS 145
           + Y NKYN +NN+
Sbjct: 98  YNYNNKYNYNNNN 110


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +1

Query: 376  QHCPPSKSCWTARIIIQRK----KTCRNLSLTFLMKPANLKNGNRMTIKKTRLSS 528
            QH PP+ SC T  +  Q++         L++    + A    GN +    T +SS
Sbjct: 1266 QHAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAYRDAVTVPGNNLIATNTTVSS 1320


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 399 LLDRTNHNPTKEDLQEFVVDFFDETSELEEWK 494
           ++DR   N     L E    + D +S +E W+
Sbjct: 316 VIDRETFNQLISSLDEIRTRYKDSSSSVEGWE 347


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 207 LFLLLVGLTTVIADD 251
           +FLL+V +T VIA++
Sbjct: 6   IFLLMVSITLVIAEE 20


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 207 LFLLLVGLTTVIADD 251
           +FLL+V +T VIA++
Sbjct: 6   IFLLMVSITLVIAEE 20


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 207 LFLLLVGLTTVIADD 251
           +FLL+V +T VIA++
Sbjct: 6   IFLLMVSITLVIAEE 20


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 192 VFTMRLFLLLVGLTTVIADDLPPTCIRPV 278
           +FTM + + +VG T VIA  +    +R V
Sbjct: 43  LFTMLIIVTIVGNTLVIAAVITTRRLRSV 71


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 177 YKNKYNN-DNNSVTLSTKL*Y*VSN 106
           Y N YNN +NN+     KL Y + N
Sbjct: 334 YNNNYNNYNNNNYNNYKKLYYNIIN 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,464
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)