Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29d07
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 284 8e-78
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 43 5e-05
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 42 7e-05
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.23
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.70
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.92
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 28 1.2
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.8
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.8
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 4.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.5
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 8.6
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 284 bits (697), Expect = 8e-78
Identities = 133/229 (58%), Positives = 176/229 (76%), Gaps = 3/229 (1%)
Frame = +2
Query: 65 SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 241
+K +R++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67
Query: 242 MATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTXSIYIPK 421
TIQVYEETSG+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + + SIYIP+
Sbjct: 68 KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127
Query: 422 GINVPSLAREVDWEFNP-LNVKVGSHITGGDLYGIVHENTLVK-HRMLVPPKAXGTVTYI 595
GIN SL RE W+F P ++++G H++GGD++G V EN+L H++++PP+A GTVTYI
Sbjct: 128 GINTESLNREHKWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVTYI 187
Query: 596 APAGNYKVTDVVLETEFDGERQKYSMLQVWPVRXPRPVTEKLPANHPLL 742
A AG+Y V + +LE EF+G++ +SML WPVR RPV + L AN PLL
Sbjct: 188 AEAGSYHVDEKLLEVEFNGKKHSFSMLHTWPVRAARPVADNLTANQPLL 236
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 233 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTXSIY 412
E + TI + + T G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160
Query: 413 IPKGINVPSLARE 451
P + PS +
Sbjct: 161 SPIHADAPSFEEQ 173
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 7e-05
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +2
Query: 113 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 283
+ V +++GP+V + + E+V + + G+++ + G A +QV+E TSGV
Sbjct: 24 YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83
Query: 284 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 379
V + TG + + + +LG +F+G P+
Sbjct: 84 VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPI 116
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 232 KTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 80
+T +L E DTD+ VHS+S GS+ S D E +I ++G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.70
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 299 VLDHLQLHLKFLRIPGWWPC 240
V+D L + LR+P WWPC
Sbjct: 67 VVDISNLVIYALRVPNWWPC 86
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 366 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 271
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +2
Query: 332 GPGILGSIFDGIQRPLKDINELTXSIYIPKGINVPSLAREVDWEFNPLNVKVGSHITGGD 511
G ++ S+ + R LKDI T ++ + S A ++D + P+ K SH+
Sbjct: 264 GQELIPSVIGPMARSLKDIEFFTETV-------IASEAWKIDSKLLPIPWKNQSHLKSKK 316
Query: 512 L-YGIVHENTLVK-HRMLVPPKAXGTVTYIAPAGNYKVTDVVLETEFD 649
L +G++ + +VK H ++ +A V + Y+V ++ + + D
Sbjct: 317 LIFGVLKTDGIVKPHPPII--RALNEVVAVLEKSGYEVIEISIPFQKD 362
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 174 ADPDIFSAVTTGPDTAKTYPN 112
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 454 NLPGQGRHVDTLGDVDGXSQLVDVLEGTLNTVKDGTQDTGTKFY*QRLSSTE 299
+L Q HVD D S L+ +L LN ++G K+Y SST+
Sbjct: 40 SLSAQQPHVD-----DQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTD 86
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 233 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 328
E D A++ + T+ +T DPV + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 585 TVPLALGGTNILCLTRVFSCTIPYKSPPVMWDPTLTFNGLNSQS 454
TVP T + S ++PY S PV P T N S S
Sbjct: 412 TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 269 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 397
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,769
Number of Sequences: 5004
Number of extensions: 65626
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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