Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d06
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    31   0.015
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    31   0.015
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.55 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.55 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 195 AAGIFLWTLCRAHVPLPPTFAQ 130
           A GI  W LC  HV LP TF Q
Sbjct: 778 AFGILFWYLCAGHVRLPYTFEQ 799


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 195 AAGIFLWTLCRAHVPLPPTFAQ 130
           A GI  W LC  HV LP TF Q
Sbjct: 816 AFGILFWYLCAGHVRLPYTFEQ 837


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 581 RQTTMATENLLINYSSN 531
           R  TM  ENLL+NY +N
Sbjct: 35  RNITMVLENLLMNYENN 51


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 721 ETPRSFSPQP*TSLSGSDHSKSQSNPVSGTS 629
           E   S  PQP  SL GS  S S  +PVS  S
Sbjct: 50  ENTISSVPQPPRSLEGSYDSSSGDSPVSSHS 80


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 589 KSGDKPPWQQKIFSSIIAAI 530
           ++GDKPP     F +++A++
Sbjct: 159 RNGDKPPLTYHQFQTVVASM 178


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -1

Query: 687 HPYRDLTTASHKAILYLEHQWVALFF*SVPFPVNLETNH 571
           HP R   +   +AI  +   W+     ++PF   ++ N+
Sbjct: 138 HPLRHYRSGLKRAIRSIFGAWLIALIFAMPFATYVDINY 176


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 640 SGTSVGRIILLICSIPCKSGD 578
           +G ++ R+I  +CS  CK  D
Sbjct: 230 TGCTITRVIPQVCSGNCKLND 250


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 219 PPTPVIWAAAGIFLWTL 169
           PP P++W   G  L TL
Sbjct: 338 PPPPLVWRRNGADLETL 354


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 640 SGTSVGRIILLICSIPCKSGD 578
           +G ++ R+I  +CS  CK  D
Sbjct: 230 TGCTITRVIPQVCSGNCKLND 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,250
Number of Sequences: 438
Number of extensions: 5066
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)