Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d04
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...   106   4e-24
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    34   0.024
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    30   0.29 
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    29   0.67 
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.89 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.89 
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    28   1.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    28   1.6  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   2.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.6  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    26   4.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    26   4.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.3  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score =  106 bits (254), Expect = 4e-24
 Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
 Frame = +3

Query: 270 AKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFVYL-WVYQRPWIL 446
           A G TL    TL    +  G+ +++KDLGPQ+ WR VF+ EY GPL ++L ++    WI 
Sbjct: 50  ADGTTLLPNTTLRKYGVGPGATIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIY 109

Query: 447 YGTQTSSPEQVATVAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFA-LY 623
                    Q   +A +    H+ KR +E++F+HRFS  TMPL+N+F+NCA+Y L + L+
Sbjct: 110 RKDYNLCLNQ--KIAFVLVMLHFMKREYESIFVHRFSLATMPLRNIFKNCAHYHLLSGLF 167

Query: 624 VAYHVNHP 647
           +AY +  P
Sbjct: 168 LAYFIYGP 175


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 168 IHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL- 344
           + V  ESS+  +KE I       +  +RQ  +L   G+ LKDE++L +  IQDG  + L 
Sbjct: 18  VTVDSESSVLALKEAIAPVA--DIEKERQ--RLIYAGRVLKDEESLKTYKIQDGHSIHLV 73

Query: 345 KDLG 356
           K LG
Sbjct: 74  KTLG 77


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
 Frame = +3

Query: 132 ILSVSS--AKPLGKIHVTGESSIKNVKEKIQQSVKKSLYP--DRQALKLEAKGKTLKDED 299
           ILSV S  AK +     T +SS K  +E+  +   +S+YP  + ++  +E  GK+L+D D
Sbjct: 362 ILSVVSFLAKMVPPSSFTQKSSAK--EEESDKVKGESVYPKPESESYDVEMNGKSLEDSD 419

Query: 300 TLNSLNIQDGSK 335
           +L+ L + +  K
Sbjct: 420 SLSELYLTNEEK 431


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 135 LSVSSAK---PLGKIHVTGESSIKNVKEKI 215
           LS++SAK   P GK+H T E   +NVK+K+
Sbjct: 31  LSLNSAKWEYPEGKVHETQEERCQNVKKKL 60


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 153 KPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 299
           KP  K     E   KN  E   +   +  YP  ++LK    G T++DE+
Sbjct: 27  KPRKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLESLKTVGNGDTIQDEE 75


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +3

Query: 447 YGTQTSSPEQV-ATVAAICWS-AHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFAL 620
           Y  ++  P +  ++V  I  S + Y +R F+   +  F    M LK   +N   Y     
Sbjct: 640 YSGESKEPNKADSSVVDIKQSDSSYRRRSFKKSLLTGFCLALMALKFAIQNMPPYD---- 695

Query: 621 YVAYHVNHPLYTAPCTTCYYIGLGGFV 701
           Y  YH N  L+TA   T ++ GL  F+
Sbjct: 696 YTPYHPNEKLFTAGIWTIHF-GLDNFM 721


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +3

Query: 108 DKHNMEIEILSVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTL 287
           +K N+ I+ L+ +  K L K  V  ESS+K+   ++ Q +K+ +      +  E   +TL
Sbjct: 495 EKANIVIDELNSAKLK-LSK-QVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTL 552

Query: 288 KDEDTLNS 311
           K+ +TL +
Sbjct: 553 KEFETLKT 560


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 189 SIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSL-NIQ 323
           S+  +   +Q S+  SL PD+ A  +E   K L    T+N L NIQ
Sbjct: 365 SMSEIVTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQ 410


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 195 KNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVS 368
           K+V+E  +   K+         + E++GKT  +   L+   +++ SKLF  D+   VS
Sbjct: 48  KSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSKLF-NDINEDVS 104


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 138  SVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLN 317
            +V     L K+H    S ++N+K ++Q++ K+ +  D   ++      T    +    LN
Sbjct: 1479 AVEKLGALQKLHSESLSLMENIKSQLQEA-KEKIQVDESTIQELDHEITASKNNYEGKLN 1537

Query: 318  IQDGSKLFLKDLGPQVSWRNVFLAE 392
             +D     ++DL   +   N  LAE
Sbjct: 1538 DKDS---IIRDLSENIEQLNNLLAE 1559


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 413 LLVGVSKTVDFIWYTNVKS*ASSYSCSNMLVS 508
           L +   K+ DF WYT   + ++ YS S + +S
Sbjct: 168 LYLAQDKSADFQWYTKRAAISAIYSASELFMS 199


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 186 SSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLG 356
           +SI     ++++ V   L  D + L+ E K ++++DE   + ++   G   F+K  G
Sbjct: 214 ASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVDDSSGGAGFVKASG 270


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 204 KEKIQQSVKKSLYPDRQALK-LEAKGKTLKDEDTLNS 311
           KEK Q   KKSL  D Q+L+ LE + +++      NS
Sbjct: 767 KEKSQNHEKKSLNSDNQSLRPLENENQSVSSTQGSNS 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,370
Number of Sequences: 5004
Number of extensions: 65152
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)