Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d02
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   6.6  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 185  AESTCAAPFDAKHSPCGSAIRQPLTLGIDMISST-TLSRSFS 63
            A ST   PF+A  S   +  ++PL L  + ++ T ++ RSF+
Sbjct: 1321 ASSTLQVPFNASSSSLATPKKEPLRLDTNSLTLTSSMPRSFT 1362


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/83 (24%), Positives = 39/83 (46%)
 Frame = +1

Query: 52  LIKMENDLDKVVEEIMSMPNVNGCLIADPQGLCLASKGAAHVDSAGIIVAISEQACKIQP 231
           L+ ++ ++   +E   S PN  G L+ + +GL   ++    + S   +     Q C   P
Sbjct: 73  LLSLKKEITLQIERC-SDPNERGKLVNEAKGLKKKTEEYNKIISK--VTNDLYQYCLAVP 129

Query: 232 NMKPPTVCLETDKKQCLIQRHGT 300
           N   PTV +  + K  ++Q+ G+
Sbjct: 130 NTTLPTVPVGPEDKAVVVQKIGS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,738
Number of Sequences: 5004
Number of extensions: 55188
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)