Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29d02
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    29   3.5  
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   6.2  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   6.2  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    28   6.2  
U41272-7|AAY86277.1|  240|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical protein
            C44B9.4 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 314  IAPVIVPCRCMRHCFLSVSRQTVGGFMFGC 225
            I P  + CRC +H  L +SRQ   G +  C
Sbjct: 1098 IIPPHIKCRCQKHSDLQISRQESTGELVRC 1127


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 737 IYVVTKNLYLEYNIMLIIIVKLLLSMVVSHYNNLAVNIYSL*NNIIQCLCGFTFYDW 567
           +YV+   L+ +  I  +  +       V    NL VNIY + NN++  +C   FY +
Sbjct: 178 VYVIYPMLFTKPIIFNLTHMSWFFDPGVGKDPNLYVNIYHIFNNMMVSICTVLFYGY 234


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 55  IKMENDLDKVVEEIMSMPNVNGCLIADPQGLCLASKGAAHVDSA--GIIVAISEQACKIQ 228
           +  + DL K +    S+  +NG L  DP  L L  K    ++    G I   +++   +Q
Sbjct: 517 LPFDGDLVKAIATCHSLTRINGVLHGDPLDLILFQKTGWTMEEGIEGDIEEETQRFDNVQ 576

Query: 229 PNMKPPT 249
           P++  PT
Sbjct: 577 PSIIKPT 583


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 278  HCFLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQP 117
            HC   VSR+T   F F C    C     +   ++ C    D   S C SA   P
Sbjct: 3950 HCE-DVSRRTCSPFEFECANSVCIPRKFMCDGDNDCGDNSDETSSECRSAQCDP 4002


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 278  HCFLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQP 117
            HC   VSR+T   F F C    C     +   ++ C    D   S C SA   P
Sbjct: 3950 HCE-DVSRRTCSPFEFECANSVCIPRKFMCDGDNDCGDNSDETSSECRSAQCDP 4002


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 344 LFYFYVFNLKIAPVIVPCRCMRHCFLSVSRQTVGGF 237
           +FYF   +L +  ++  C C+RH  LS + + VG F
Sbjct: 279 VFYFVSLDLNLQKILKKCVCLRHLTLS-NVEDVGVF 313


>U41272-7|AAY86277.1|  240|Caenorhabditis elegans Hypothetical
           protein T03G11.9 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -2

Query: 731 VVTKNLYLEYNIMLIIIVKLLLSMVVSHYNNLAVNIYSL*NNIIQCLCGF 582
           V T NL+L+  +++   V  +L M   +Y+  ++ +  + + I QC+C F
Sbjct: 121 VYTVNLWLDIFLIVANTVVAILMMFGLYYDKASLLVPFIVSEITQCVCFF 170


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -2

Query: 233 FGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQPLTLGIDMISSTTLSRSFSIFI 54
           F C LQ C  + T   +E T  APF      CG  I+  L    D+I   T       F+
Sbjct: 25  FLCGLQICHRIKTRGSSEGTSPAPFLLSFLSCGLFIQYGLLKDDDVI---TYCNGIGCFL 81

Query: 53  KQIYI 39
           +  Y+
Sbjct: 82  QACYL 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,572
Number of Sequences: 27780
Number of extensions: 305351
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)