Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c24
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   150   1e-37
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   9.0  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  150 bits (363), Expect = 1e-37
 Identities = 73/154 (47%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
 Frame = +2

Query: 38  LSPKIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGXTVT*AHHSLIENNFXQTKQRL 211
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 212 FLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHXIIGTLFLLICYIRHL 391
           ++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH I+GT+ LL+      
Sbjct: 176 YMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIY 235

Query: 392 NNHFSKNHHFGFEAAA*Y*HFXDXV*LFLYISIY 493
             H +  HH GFE    Y HF D V LFLY++IY
Sbjct: 236 TYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 392 NNHFSKNHHFG 424
           NNHF+K HH G
Sbjct: 162 NNHFTKTHHQG 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,365
Number of Sequences: 5004
Number of extensions: 26269
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)