Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c24
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   2.0  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   2.0  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   2.0  
Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 200 KQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIAT-GFHGIHXIIGTLFLLIC 376
           +Q L L  LLG+       Y  +E  ++  D  Y     + T GF  +H  +GT+  ++C
Sbjct: 292 RQLLVLVFLLGYMTISACVYTILEPMWSFLDSFYFCLVSLLTVGFGDLHP-VGTVEYMLC 350

Query: 377 YI 382
            I
Sbjct: 351 SI 352


>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 74  PSRITPFNPFQIPLLNTIIL 133
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 74  PSRITPFNPFQIPLLNTIIL 133
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 74  PSRITPFNPFQIPLLNTIIL 133
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical
           protein F55C5.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 327 PVAMKKVDP*ILSAIVKEASIYSYA 253
           P  +KK+DP I++ I  + S YSY+
Sbjct: 170 PWRLKKIDPKIITGITVDRSYYSYS 194


>Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical
           protein F46B3.11 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +2

Query: 164 HHSLIENNFXQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGST--FFIATGFHG 337
           HHS I  +      +  L +L G    + Q Y Y+   F I  R    T  F I   F+ 
Sbjct: 7   HHSQIPYDIVSFGFQTILIVLAGLQIVVYQFYSYV---FKINQRRDKETLLFPITNCFYK 63

Query: 338 IHXIIGTLFLLICYIRHLN--NHFSKNHHF 421
           I  I      LIC+I  L   NH +  ++F
Sbjct: 64  I--IKALTRSLICFIVFLTVFNHTTSKYYF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,246,121
Number of Sequences: 27780
Number of extensions: 139431
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)