Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29c22
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 35 0.013
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.85
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 29 0.85
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 28 1.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 28 1.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.5
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 27 2.6
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 27 2.6
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 2.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.6
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 2.6
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.4
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 4.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 6.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 6.0
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 6.0
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.9
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 25 7.9
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.9
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 7.9
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 34.7 bits (76), Expect = 0.013
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 94 SFFKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPK 273
S KKT + E K G S S + ++ SDE D + +SN I + + L K
Sbjct: 522 SLTKKTAVSMQESKEEGRSDESSESEESGSSSDESDNSEKEDRSNPIPVEKRASTVLNTK 581
Query: 274 NKAKRQR 294
K K +R
Sbjct: 582 KKRKAKR 588
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 124 MEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKRQR 294
+E K SK+ +G++S EK + +++ S +S+D PK K K ++
Sbjct: 451 IEKKKKKSSKLKEADGESS--KKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKK 505
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 28.7 bits (61), Expect = 0.85
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 472 KSLSRDEVKENSLKLKIVGSKEKDNIVKNTEHIDNIENESEEIQ-KVAENAYNPSKSKYH 648
KS S K +SLK+ + KEK N + E + N E+E Q K+ +A N ++
Sbjct: 5 KSRSSSTRKGSSLKVPEIKEKEKINAINTYEDVANSEDEFYNAQDKILFDADNGEQADEL 64
Query: 649 PIKD 660
+ D
Sbjct: 65 ELSD 68
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -1
Query: 609 YFLYFFTLIFNI--INMLGIFHNIV---FFL*SNNLQF*AVFFYLITRQTLCTL 463
Y Y F +F I + LG F ++ FFL + LQ ++ F+L+ T+ TL
Sbjct: 325 YLFYVFNRLFRIWWLKYLGPFSYLILYYFFLDISKLQMTSLTFFLLISTTILTL 378
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 508 LKLKIVGSKEKDNIVKNTEHIDNIENESEEIQKVAENAYNP 630
++ + SK K E D+ E+E EE+++ E Y P
Sbjct: 167 IRTSLRSSKGKSVNYNEQEFYDDFEDEEEEVEEQVEEEYEP 207
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 157 SHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDS 261
S +G S SDE D S +S+S DND S S
Sbjct: 100 SEASGSGSS-SDESDSSSSESESSSEDNDSSSSSS 133
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 296 TRCRLALFFGFKESWESPSLSMLLDCCLSE 207
T C +A+FFGF E P+++ L+ C ++E
Sbjct: 99 TLCTIAMFFGFLE--VIPAIAYLIACYVAE 126
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 81 KEYHVILQENSIYTYGNKK*WWIQSK 158
K + + NS Y + +KK WWI S+
Sbjct: 207 KVVSTVAKYNSAYIHNSKKFWWIMSE 232
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 469 AKSLSRDEV--KENSLKLKIVGSKEKDNIVKNTEHIDNIENESEEIQKVAENAYNPSKS 639
+KSLS D + K +K ++ + DN V ++ +N+EN + ENA +P +
Sbjct: 205 SKSLSSDAIPLKNGEIKSTMLMPSDSDNSVPGIQNSNNLENTGAFV----ENANSPQSN 259
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 380 FKVIESSLSERSSFFTLTGDSDSLLELITRCRLALFF 270
+ VI S ++ RSSF L+ DSD + ++ LFF
Sbjct: 969 YSVIPSRMTGRSSFTQLSDDSDETI-ILASATYGLFF 1004
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 151 KVSHVNGDTSPISDEKDKPSERQQSNSI 234
KV V+G+TS S E++KPS + S+
Sbjct: 383 KVEKVDGNTSSPSKEEEKPSTEPEKPSV 410
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +1
Query: 100 FKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLK 267
F K P + +SN GS + +GD S EK K S + S N G Q K
Sbjct: 379 FGKEPEGYLSNQSNNGSAQNKKSGDNS----EKTKNSLKSSSKKSANTGSGQGKTK 430
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 37 LKF*NIPETSHNMAQRSITSFFKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKD 201
L F +P + H + + +FK T PM + G +VSH+ P+ +++D
Sbjct: 6 LLFLALPISEHYIEES--LKYFKLTSNDPMILSGFRGPRVSHLTIGMIPVKNDED 58
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 646 HPIKDACWSKGDPVPYLAL 702
HPI D W++ DP P+ +
Sbjct: 234 HPILDFTWARSDPSPHFRI 252
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 523 VGSKEKDNIVKNTEHIDNIENESEEIQKVAEN 618
+ S D I++ E D+IENE+ + +EN
Sbjct: 63 LNSDGTDRIIEEEEEEDDIENEASSFSEQSEN 94
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 16 VNTTSSKLKF*NIPETSHNMAQRSITSFFKKTPFTPMEIKSNGGSKVSHVNGDTSPISD 192
+N S KL+ N+ E + M I + + PF+PM+I S V + SP ++
Sbjct: 652 LNIMSEKLQRTNLKEQTPEM---DIENSSQNLPFSPMKISPIRASPVKTIPSSPSPTTN 707
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 472 KSLSRDEVKENSLKLKIVGSKEK-DNIVKNTEHIDNIENESEEIQKVAENAYNPSKSKYH 648
K L E + ++K+ +KE ++IV N ID + EE+ A+ + +KSK+
Sbjct: 336 KELLLAEKEFQHAEVKLSEAKENLESIVTNQSDIDGKISSKEEVIGRAKGETDTTKSKFE 395
Query: 649 PI 654
I
Sbjct: 396 DI 397
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -2
Query: 242 SLSMLLDCCLSEGLSFSSDMGDVSPFTWLTLD 147
+++ L++C LS+ + S GD +PFT +T++
Sbjct: 1011 TVAHLVECQLSKVSALSGFEGDATPFTDVTVE 1042
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 532 KEKDNIVKNTEHIDNIENESEEIQKVAENAY 624
KEK ++ ++ I+ I+N E++ + +AY
Sbjct: 35 KEKSRLIASSAPIEKIKNVESELENIGIDAY 65
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 181 PISDEKDKPSERQQSNSIDNDGDSQD 258
P D D+PS + S +DND D D
Sbjct: 1455 PSFDSMDEPSMQDDSFIVDNDEDVDD 1480
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +1
Query: 529 SKEKDNIVKNTEHIDNIENESEEIQKVAENAYN-------PSKSKYHPIKDACW 669
+KE++++ N + I + ENE EE+ + A P + K + ++D W
Sbjct: 4 TKEEEDLNNNIDEISDGENEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENW 57
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +1
Query: 133 KSNGGSKVSHV-----NGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKP 270
K GGS V + D + S KD+PSE ++ S D + +KP
Sbjct: 226 KQEGGSSTEKVGQPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIKP 276
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 475 SLSRDEVKENSLKLKIVGSKEKDNIVKNT----EHIDNIENESEEIQKVAENAYNPSKS 639
S SR + KE+++ +G ++ + ++ E DN E + + + NA+NP S
Sbjct: 388 SRSRPDDKESTMDRHHLGEEQSEAMLSQRKAAIEEDDNYEPDENPLTETLANAHNPQFS 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.127 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,194
Number of Sequences: 5004
Number of extensions: 54093
Number of successful extensions: 204
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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