Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c22
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 172 DTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNK 279
           ++S   DE+     ++ S S++ DGD     K K+K
Sbjct: 106 NSSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHK 141


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 123 RCKWSFLEE*RDTPLSHVVT 64
           R  W +L++ + TPL  V T
Sbjct: 130 RINWEYLDKYKPTPLGAVAT 149


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 176 VSPFTWLTLDPPLLFISIGVNGVFL 102
           +SP + L +   L+F+ I +NGV++
Sbjct: 763 ISPRSQLIICSGLVFVQILINGVWM 787


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 79  QRSITSFFKKTPFTPMEIKSNGGSKVSHVNGDTSPISDE--KDKPSERQQSNSI-DNDGD 249
           QRS++S F+ +      + S+      H+N D+S   ++     P+  + +N +  +  D
Sbjct: 37  QRSVSSGFRSSLRNYKTLISSHDELPGHINCDSSKFEEDLMNKLPTTPEYNNHLYGSTPD 96

Query: 250 SQD 258
           S+D
Sbjct: 97  SRD 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,238
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)