Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c18
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.62 
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   5.8  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.7  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 223 THTPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 321
           T  PP          P+R P+L+AP   P+ PP
Sbjct: 227 TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 568 SVIREIVESGVQEDP-----FYVMDLGEVVARYQQWKELLPRV 681
           + I EI  + V+ +P     F+V DL  V  +  +W   LPRV
Sbjct: 49  NTIEEIERAAVRGEPADSDAFFVADLNGVYRQLLRWHAKLPRV 91


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 406 SGLAVSSVVGAWSWGPTSAS 347
           SGL  SS V AW+W  T  S
Sbjct: 54  SGLISSSTVSAWTWPATLLS 73


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 526 EQRIRVMEGSWSPVSVIREIVESGVQEDPFYVMDL 630
           E RI  + G+  PV+VIR  V+  V  D   + DL
Sbjct: 245 ENRIHSIIGAPQPVTVIRNQVKQTVLADDLVIGDL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,221
Number of Sequences: 5004
Number of extensions: 41649
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)