Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c18
         (681 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    31   1.5  
AY118656-1|AAM50025.1| 1242|Drosophila melanogaster SD07467p pro...    29   7.8  
AE013599-1825|AAF58294.1| 1242|Drosophila melanogaster CG8241-PA...    29   7.8  

>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
           protein.
          Length = 1286

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 641 TTSPRSIT*KGSSCTPLSTISRITLTGDHD-PSITLMRCSSTT 516
           TT+PR  T   S+C P +T  R T T     P+ T  RC++TT
Sbjct: 269 TTTPRCTT-TTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTT 310



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 641  TTSPRSIT*KGSSCTPLSTISRITLTGDHDPSITLMRCSSTT 516
            TT+PRS T   +SC   +T    T T    P+ T  R ++TT
Sbjct: 909  TTTPRSTTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTT 950



 Score = 29.9 bits (64), Expect = 3.4
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -2

Query: 641 TTSPRSIT*KGSSCTPLSTISR-ITLTGDHDPSITLMRCSSTTFMVLSNFTWTCFLSLSR 465
           TT+PR  T   S+C+P  T  R  T T    P+ T  RC  TT    S  T T   S ++
Sbjct: 301 TTTPRCTT-TTSTCSPTRTTPRSTTTTSTSRPTTTTPRC--TTTPSTSRPTTTTPRSTTK 357

Query: 464 ARRGPAPRSTVPFP 423
                AP +T P P
Sbjct: 358 TST-CAPTTTTPRP 370



 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 641 TTSPRSIT*KGSSCTPLSTISRITLTGDHDPSITLMRCSSTT 516
           TT+PRS T   +S    +T    T T    P+ T  RC++TT
Sbjct: 237 TTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTT 278


>AY118656-1|AAM50025.1| 1242|Drosophila melanogaster SD07467p
           protein.
          Length = 1242

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 385 VVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRV 278
           V+G    G T+   Q  GECG  A    G  QP RV
Sbjct: 607 VIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRV 642


>AE013599-1825|AAF58294.1| 1242|Drosophila melanogaster CG8241-PA
           protein.
          Length = 1242

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 385 VVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRV 278
           V+G    G T+   Q  GECG  A    G  QP RV
Sbjct: 607 VIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRV 642


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,222,707
Number of Sequences: 53049
Number of extensions: 607274
Number of successful extensions: 1622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)