Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29c18
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97191-6|AAM15576.1| 263|Caenorhabditis elegans Hypothetical pr... 37 0.015
U97191-5|AAB52428.1| 477|Caenorhabditis elegans Hypothetical pr... 37 0.015
U64854-5|AAB18317.1| 422|Caenorhabditis elegans Hypothetical pr... 32 0.33
U03059-1|AAA88795.1| 422|Caenorhabditis elegans ornithine decar... 32 0.33
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 2.3
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 29 3.1
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 28 5.4
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 28 5.4
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 28 5.4
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 28 7.1
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 28 7.1
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 28 7.1
AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical ... 28 7.1
AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical ... 28 7.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 9.4
U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase ... 27 9.4
U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase ... 27 9.4
U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase ... 27 9.4
J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein ( C.ele... 27 9.4
>U97191-6|AAM15576.1| 263|Caenorhabditis elegans Hypothetical
protein F53F10.2b protein.
Length = 263
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 526 EQRIRVMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRV 681
EQ I V+ G++ +P+ + R + PF+VMD+ + R + + +LPRV
Sbjct: 27 EQSIAVLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLPRV 79
>U97191-5|AAB52428.1| 477|Caenorhabditis elegans Hypothetical
protein F53F10.2a protein.
Length = 477
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 526 EQRIRVMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLPRV 681
EQ I V+ G++ +P+ + R + PF+VMD+ + R + + +LPRV
Sbjct: 27 EQSIAVLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLPRV 79
>U64854-5|AAB18317.1| 422|Caenorhabditis elegans Hypothetical
protein K11C4.4 protein.
Length = 422
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 514 KVVEEQRIRVMEGSWSPVSVIREIVES-GVQEDP--FYVMDLGEVVARYQQWKELLPRV 681
+++ + +I V+ + + R+I S +QE+ F ++DL +++ R+Q WK LP +
Sbjct: 6 EIIGDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLVDLDKIIERFQLWKRELPMI 64
>U03059-1|AAA88795.1| 422|Caenorhabditis elegans ornithine
decarboxylase protein.
Length = 422
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 514 KVVEEQRIRVMEGSWSPVSVIREIVES-GVQEDP--FYVMDLGEVVARYQQWKELLPRV 681
+++ + +I V+ + + R+I S +QE+ F ++DL +++ R+Q WK LP +
Sbjct: 6 EIIGDNKIGVLPKQVDQLQMCRDIAASKDLQENDSSFMLVDLDKIIERFQLWKRELPMI 64
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 177 EHRVSPARVAVPGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 341
+ +V+PA A P DA P+ P C PA A +P + D+
Sbjct: 294 DEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 433 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 272
C F+++ L + SV+G W +G T V G G +AS TA YV
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 10 DNEHYENYDVEATTG-MNMMEECQSERT 36
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +1
Query: 454 PRRARDKLRKQVHVKLDNTMKVVEEQRI 537
P R RD+++++V ++ + ++ EE+R+
Sbjct: 406 PHRTRDEIKREVQMEYERRWRIEEEERL 433
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 375 APTTLDTANP 404
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 375 APTTLDTANP 404
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 375 APTTLDTANP 404
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical
protein F16B4.2a protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 475 LRKQVHVKLDNTM-KVVEEQRIRVMEGSWSPVSVIREIVE 591
LR+++H L K V E+R+ ++ S+ PV + RE+V+
Sbjct: 2 LRRRIHEILSRKFPKWVFEERLEPLDWSFLPVEIRREVVK 41
>AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical
protein F16B4.2b protein.
Length = 367
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 475 LRKQVHVKLDNTM-KVVEEQRIRVMEGSWSPVSVIREIVE 591
LR+++H L K V E+R+ ++ S+ PV + RE+V+
Sbjct: 2 LRRRIHEILSRKFPKWVFEERLEPLDWSFLPVEIRREVVK 41
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 211 RAERTHTPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 321
R +PP SPQRRP P P PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
>U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase
protein 2, isoform b protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 520 VEEQRIRVMEGSWSPV--SVIREIVESGVQEDPFYVMDLGEV 639
+EE + M + PV S I+E G + D FYV+D G V
Sbjct: 94 LEEDEQKTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTV 135
>U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase
protein 2, isoform a protein.
Length = 366
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 520 VEEQRIRVMEGSWSPV--SVIREIVESGVQEDPFYVMDLGEV 639
+EE + M + PV S I+E G + D FYV+D G V
Sbjct: 126 LEEDEQKTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTV 167
>U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase
protein 2, isoform c protein.
Length = 376
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 520 VEEQRIRVMEGSWSPV--SVIREIVESGVQEDPFYVMDLGEV 639
+EE + M + PV S I+E G + D FYV+D G V
Sbjct: 136 LEEDEQKTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTV 177
>J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein (
C.elegans cAMP-dependentprotein kinase subunit R mRNA,
complete cds. ).
Length = 376
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 520 VEEQRIRVMEGSWSPV--SVIREIVESGVQEDPFYVMDLGEV 639
+EE + M + PV S I+E G + D FYV+D G V
Sbjct: 136 LEEDEQKTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTV 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,418
Number of Sequences: 27780
Number of extensions: 287472
Number of successful extensions: 825
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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