Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c17
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   4.2  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    23   5.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    22   9.8  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    22   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 81  PGTSQRAAPPPLLLF 125
           P TS RA PPP L F
Sbjct: 729 PSTSARALPPPGLRF 743


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 88  LVSGPPLLHYYSLL*NVFS 144
           L  GPP+  YY  L + FS
Sbjct: 162 LEEGPPITEYYDTLTSAFS 180


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 108 PPLLLFIVKRIFYKEMENKD 167
           PP  L + KR F +E+EN +
Sbjct: 632 PPEKLDVTKRAFGREIENSN 651


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 113 WRRGGPLTSARPP 75
           W+R G  T+A PP
Sbjct: 256 WKRNGDYTNASPP 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,060
Number of Sequences: 5004
Number of extensions: 9552
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)