Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c17
         (193 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0296 + 2240376-2240580,2241556-2241764,2241847-2241975,224...    26   3.7  
05_03_0620 - 16286207-16286342,16286861-16286955,16287051-162871...    26   3.7  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    26   4.9  
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768...    25   6.4  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     25   8.5  

>12_01_0296 +
           2240376-2240580,2241556-2241764,2241847-2241975,
           2242271-2242417,2243045-2243108,2243208-2243311,
           2243373-2243411
          Length = 298

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 66  IVPRRPGTSQRAAPPPLLL 122
           + PRR   +++A+PPP LL
Sbjct: 37  VAPRRENATKKASPPPSLL 55


>05_03_0620 -
           16286207-16286342,16286861-16286955,16287051-16287158,
           16287262-16287357,16287446-16287604
          Length = 197

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 113 WRRGGPLTSARPPRNDK*IHRRLAAAPTETSRS 15
           WR   P  S+ PPR    + RR  AA T +S S
Sbjct: 7   WRLLPPAASSPPPRRQAALLRRHPAATTTSSSS 39


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 25  VSVGAAASRLCIYLSFRGGRALVS-GP 102
           +  G    R C+Y+SF+G   L+S GP
Sbjct: 36  LGAGNEVGRSCVYMSFKGRTVLLSLGP 62


>10_04_0022 +
           7687383-7687670,7688479-7688556,7689456-7689535,
           7689876-7690095,7690444-7690677
          Length = 299

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 113 WRRGGPLTSARPPR 72
           WRRGGP  +AR P+
Sbjct: 46  WRRGGPPVTARGPQ 59


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 45  EPPVYLFIVPRRPGTSQRAAPPP 113
           +PP Y    P  PG+S    PPP
Sbjct: 438 QPPPYASYPPPPPGSSMYNPPPP 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,363,158
Number of Sequences: 37544
Number of extensions: 92413
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)