Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c17
         (193 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   1.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   4.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    19   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   4.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   7.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 123 FIVKRIFYKEMENKDI 170
           FI K+I  K MENKDI
Sbjct: 116 FISKKI-KKTMENKDI 130


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 83  GH*SAGRPSSTTTLYCKT 136
           GH   GRPS TT     T
Sbjct: 216 GHAQMGRPSYTTATMATT 233


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 67  SFRGGRALVSGPPLLHYYS 123
           SFR       G  +LHYYS
Sbjct: 119 SFRCTERPEDGALILHYYS 137


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 2   AELIKIEKSL 31
           AELIK+EK L
Sbjct: 346 AELIKLEKEL 355


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 67  SFRGGRALVSGPPLLHYYS 123
           SFR       G  +LHYYS
Sbjct: 119 SFRCTERPEDGALILHYYS 137


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 112 GGGAAR*LVPGLRGTINKY 56
           GGGAAR +V G    ++ +
Sbjct: 75  GGGAARAVVAGRLSEVSNW 93


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 22   EVSVGAAASRLCIY 63
            E+  GAA  RLC++
Sbjct: 1087 ELEHGAAGLRLCLH 1100


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 104 GGPLTSARPPR 72
           G P T+A PP+
Sbjct: 446 GSPATTAAPPQ 456


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 48  PPVYLFIVPRRPGT 89
           P V L   PR PGT
Sbjct: 131 PSVSLSSPPREPGT 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,945
Number of Sequences: 438
Number of extensions: 901
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)