Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c16
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.2  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   8.9  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 112  AALIKLRHMPLVQRSVWNHFNKVSRNISTSKK 207
            AAL  LRH+PL QR +  +  ++  N +  KK
Sbjct: 1231 AALKSLRHLPLSQRILDANVTRLPSNFTDDKK 1262


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 253 KNWVSYGFDYTSKEEDTNAHH 315
           KNWV   F  +S+++D   HH
Sbjct: 67  KNWVRQPFSISSRKDDFTLHH 87


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 160 WNHFNKVSR-NISTSKKNSDTATTACETKTEDKNWVSYGFDYTSKEEDTNAHHATFFFSV 336
           W  + +  R N+S SKK  DT +    T   +   +  G+DY SK           FF++
Sbjct: 34  WRIWEQAFRLNVSNSKKCFDTISGHRITLPTNARGLFTGYDYESKRHRIVIRGYDKFFNI 93


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 148 QRSVW--NHFNKVSRNISTSKKNSDTATT 228
           +R  W  N   +++RNI+++K+NSD   T
Sbjct: 390 ERDEWIRNQLLQINRNINSTKENSDYLKT 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,090
Number of Sequences: 5004
Number of extensions: 53351
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)