Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c09
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    33   0.015
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    31   0.062
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    29   0.33 
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   1.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.3  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   1.8  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   2.3  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    26   2.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   5.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   5.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   5.4  

>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 33.1 bits (72), Expect = 0.015
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 118 KCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLE 237
           + DVS  DQ+  A  KV+ + G IDV++NNA ++ +   E
Sbjct: 51  QADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFE 90



 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 KTGKGGTIINISSI 361
           K GKGG+I+NI S+
Sbjct: 121 KQGKGGSIVNIGSV 134


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 31.1 bits (67), Expect = 0.062
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +1

Query: 88  TYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSL-----ENSLEGIRRL 252
           T    K+   K DV+    +  AF       G +D+V+NNA   L       ++E + R 
Sbjct: 43  TIEHSKLLKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQ 102

Query: 253 VDINVTALXXXTLKAIEIMR 312
           +++N   +   T +A+ +MR
Sbjct: 103 MNVNFWGVAYITKEALNLMR 122



 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 320 KTGKGGTIINISSIA 364
           ++GKGG I+ ISS+A
Sbjct: 123 ESGKGGRILQISSVA 137


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 1   VFXENQAKHVAILDIDTISGFKLEKHLNTTYGDGKVKFY--KCDVSIDDQLFGAFNKVLD 174
           VF E  A   A +  +T  G K  K +    G   VK Y  KCDV+I  ++  AF ++  
Sbjct: 40  VFAEAGAN--AFIVYNTTPGEKAAKEIAQANG---VKTYTCKCDVTIPKEVEHAFAEIQK 94

Query: 175 SHGYIDVVVNNAAV 216
               ID+VV N  +
Sbjct: 95  VFDTIDIVVPNNGI 108


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +1

Query: 64  KLEKHLNTTYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEGI 243
           ++ K L + Y +  V   K DVS    + G    +      IDV++NNA ++L     G 
Sbjct: 46  EIAKELESKY-EVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLAL-----GT 99

Query: 244 RRLVDINV 267
            +++D+N+
Sbjct: 100 DKVIDLNI 107


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 49   TISGFKLEKH-LNTTYGDGKVKFYKCDVSIDDQLFGAFNKVL 171
            TIS  ++ K  L  T    KV   +C++ +DD L   +NKVL
Sbjct: 1422 TISADEVGKFILEATSPTVKVSSPRCELHLDDLLSAQYNKVL 1463


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 121 CDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAV 216
           CD+SI   L   FNKV D   Y  ++ NNA V
Sbjct: 311 CDLSIFLSLLPIFNKVQDRMRY-SLLTNNAIV 341


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 DVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLE 237
           DV+    +  +  K +   G IDV++NNA  S+ + LE
Sbjct: 22  DVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLE 59


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 DVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLE 237
           DV+    +  +  K +   G IDV++NNA  S+ + LE
Sbjct: 22  DVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLE 59


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 39   GHRHNFRIQIGKTFKYYIRRWK 104
            GH    R++IG+ F  +I+ WK
Sbjct: 1167 GHNLIARVKIGELFDTFIKDWK 1188


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -2

Query: 354 EMFIIVPPFPVXXYTHYFDSF-QCXXXQGGNIYVN*SS----NXFKRIFQRNSSVIHNYI 190
           ++F+++PP  +  +  Y DS   C   +  +  V  SS    + F  +   N   +  Y 
Sbjct: 356 KLFVVIPPAIILSFDSYLDSLNDCLLSESTHTGVLCSSLKLLSKFLDVTHMNVP-LSKYE 414

Query: 189 NITMAV*NFIKRTKQLIINRDIAFVK 112
           NI   V  ++  + + + ++ I F K
Sbjct: 415 NIVTLVLEYLANSSKGLASKSIEFSK 440


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 75  FFQFESG-NCVDVQDGNMLGL 16
           FF+   G +CVD Q   MLGL
Sbjct: 147 FFELSKGIDCVDPQQSKMLGL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,239
Number of Sequences: 5004
Number of extensions: 25800
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)