Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c09
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    43   9e-05
U20864-12|AAK68358.2|  257|Caenorhabditis elegans Hypothetical p...    31   0.28 
Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical pr...    30   0.49 
Z81586-8|CAB04694.2|  305|Caenorhabditis elegans Hypothetical pr...    30   0.64 
AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z81061-2|CAB02931.1|  312|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL110487-4|CAB54427.1|  505|Caenorhabditis elegans Hypothetical ...    26   7.9  
AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical ...    26   7.9  

>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
 Frame = +1

Query: 4   FXENQAKHVAILDIDTISGFKLEKHLNTTYGDGKV-KFYKCDVSIDDQLFGAFNKVLDSH 180
           F + +AK VAI+D++   G +  K   T   +G + KF+ CD+S  D +     ++ D+ 
Sbjct: 61  FAKRKAK-VAIIDVNKEGGLETVK---TIAAEGNMAKFWYCDISDVDNMKKTAKEIEDTF 116

Query: 181 GYIDVVVNNAAV-----SLENSLEGIRRLVDINV 267
           G +++V+ NAA+      +E S E +R+ +D+N+
Sbjct: 117 GDVNIVICNAAILSFTSFMEISDELLRKCLDVNI 150


>U20864-12|AAK68358.2|  257|Caenorhabditis elegans Hypothetical
           protein F32A5.8 protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +1

Query: 25  HVAILDIDTISGFKLEKHLNTTYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVN 204
           HV + + + +   KL+K +     D K+ F  CD++       A ++ L  H  +  ++ 
Sbjct: 62  HVVMFNRNIVESEKLKKRIEEEKPDVKIDFISCDLNSLQSAKAAADEFLSKHWPLHGLIL 121

Query: 205 NAAV 216
           NA V
Sbjct: 122 NAGV 125


>Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.4 protein.
          Length = 333

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +1

Query: 103 KVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLE 237
           ++ F +CD++  + +  A  + L+S   ID+++NNA +  ++  E
Sbjct: 99  RLHFIECDLTDFESVRRAAKETLESTDTIDILINNAGIMFQSKHE 143


>Z81586-8|CAB04694.2|  305|Caenorhabditis elegans Hypothetical
           protein T05F1.10 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +1

Query: 100 GKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVS-----LENSLEGIRRLVDIN 264
           G+   Y+ ++    ++     +V++  G +D++VNNA ++     L++S   I R  D+N
Sbjct: 89  GEAHSYEVNLCDPGKIAQVGQQVINDIGKVDILVNNAGIATAKMILDSSENEINRSFDVN 148

Query: 265 VTA 273
           V A
Sbjct: 149 VKA 151


>AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical
           protein R05D8.7 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +1

Query: 79  LNTTYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSL--EGIRRL 252
           L +   + +V     DV+ +D      N  L   G IDV+VNNA  ++ ++    G  + 
Sbjct: 51  LKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQG 110

Query: 253 VDINVTALXXXTLKAIEIMR 312
           +DI    L       IE+ +
Sbjct: 111 IDIYHKTLKLNLQAVIEMTK 130


>Z81061-2|CAB02931.1|  312|Caenorhabditis elegans Hypothetical
           protein F14H8.2 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 63  QIGKTFKYYIRRWKSKILQMRCLY**SIVWC 155
           QI + F  Y R WKS +L M+     + +WC
Sbjct: 209 QIEELFNQYNRTWKSVLLDMKPKRIDTTLWC 239


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -3

Query: 299 IAFNVXXXKAVTFMSTSLRXPSREF-SNETAALFTTT--SI*PWLSRTLLNAPNN*SSIE 129
           + FN    +  + ++TSL   + E   + +++LF  +  S   W  RT   AP+N   +E
Sbjct: 20  LIFNHFNFEMASSVTTSLNFSNLESPKSNSSSLFEDSLFSSFRW-KRTPERAPSNNELVE 78

Query: 128 TSHL*NFTFPSPYVV 84
              L NF +  P+V+
Sbjct: 79  HGDLENFEYSEPFVI 93


>Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical
           protein F28H7.2 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 97  DGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENS--LEGIRRLVD 258
           +G V     D++ +          LD  G ID++VNNA   + ++    G+ + +D
Sbjct: 57  EGNVLVVVGDITQESVQENLIKSTLDKFGKIDILVNNAGAGIPDAQGKSGVNQSID 112


>AL110487-4|CAB54427.1|  505|Caenorhabditis elegans Hypothetical
           protein Y39E4B.5 protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 290 NVXXXKAVTFMSTSLRXPSREFSNETAALFTTTSI*PWLSRTLLNA 153
           N    K   F++TSLR P       T ALF + ++  W    +  A
Sbjct: 31  NTAVEKLHKFIATSLRQPGVPDDENTIALFQSATLNCWFVAQIFGA 76


>AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical
           protein Y17G9B.8 protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +2

Query: 5   LXKIRPSMLPSWTS--TQFP 58
           L K+R  +LP WTS  TQFP
Sbjct: 116 LIKVRGDLLPLWTSHDTQFP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,203,532
Number of Sequences: 27780
Number of extensions: 146928
Number of successful extensions: 373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)