Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c09
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    36   2e-04
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   3.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   3.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   4.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   4.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 35.5 bits (78), Expect = 2e-04
 Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
 Frame = +1

Query: 100 GKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEG-----IRRLVDIN 264
           GK+   +CD+S  + +      V  + G ID+++NNA ++++ +L+       +++ DIN
Sbjct: 56  GKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDIN 115

Query: 265 VTALXXXTLKAIEIMR 312
           +  L     + +++M+
Sbjct: 116 LLGLTCMIQEVLKLMK 131


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 67  LEKHLNTTYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYI 189
           LE HL   +G    K  KC  S  ++     N  L SH  +
Sbjct: 4   LEYHLRNHFGSKPFKCEKCSYSCVNK--SMLNSHLKSHSNV 42


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 69  GKTFKYYIRRWKSK 110
           GK  ++Y+RR KSK
Sbjct: 192 GKELEFYMRRIKSK 205


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 29  LPSWTSTQFP 58
           LPSWT+  FP
Sbjct: 191 LPSWTNNIFP 200


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 29  LPSWTSTQFP 58
           LPSWT+  FP
Sbjct: 206 LPSWTNNIFP 215


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 29  LPSWTSTQFP 58
           LPSWT+  FP
Sbjct: 94  LPSWTNNIFP 103


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 196 VVNNAAVSLENSLEGIRRLVDINVTALXXXTLKA 297
           V NN   SL + ++G+ RL D         T+K+
Sbjct: 124 VENNTGSSLCDLVQGLERLFDEKNAGNNKITMKS 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,385
Number of Sequences: 438
Number of extensions: 1931
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)