Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c08
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0098 - 12341741-12341769,12342530-12342927,12343843-123438...    31   0.68 
11_06_0145 - 20615044-20617167,20617444-20618076                       29   3.6  
01_05_0179 + 18973795-18973992,18974087-18974276,18974374-189745...    28   8.4  

>09_03_0098 -
           12341741-12341769,12342530-12342927,12343843-12343889,
           12344916-12345244,12345523-12345601
          Length = 293

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
 Frame = +1

Query: 241 GYTMCLMGGANNFTQYRLTCPIGFVYSH--KEQQCTNVTSYSCHESYNCTSRG--YFASE 408
           G  +C + G ++ +   L CP  ++Y H   E         SC    +  +     + S 
Sbjct: 49  GKKLCYICGDDDGSHEELRCPFNYMYYHMSDEDASAGTCEGSCSAGKHPMAEAVVVYGSG 108

Query: 409 SCTSYIACVEAINGLATARLIECPMNTVFNPEDGLC 516
            C  ++ CV  +N   T      P+      +D +C
Sbjct: 109 RCREFLRCVVRVNNFPTKLRPWDPLLEKLERKDCIC 144


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 490 VFNPEDGLCVHVNSYKCNIKSSDQTDLYTEEVFKDSRNFTFNGAFKI-NVRYIQNGFV 660
           ++N EDG   HV+S    I    QT+L+   ++   +    +    + NV++++  ++
Sbjct: 672 IYNHEDGYETHVSSENSCINPERQTNLFELGIYTRQKTIVLDSIHSMWNVQHVEKAYL 729


>01_05_0179 +
           18973795-18973992,18974087-18974276,18974374-18974504,
           18974948-18975053,18975661-18975727,18976632-18976698,
           18977858-18977947
          Length = 282

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 472 ECPMNTVFNPEDGLCVHVNSYKCNIKSSDQTDLYTEE 582
           + P+N +F     +C+ VNS+K + ++ ++T L   E
Sbjct: 175 QTPLNGIFEKATRVCISVNSHKISGENENRTFLSDNE 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,704,176
Number of Sequences: 37544
Number of extensions: 397405
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)