Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29c08
(707 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 27 0.23
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 27 0.23
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 24 1.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.8
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 3.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 3.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 3.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 5.0
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 22 6.6
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 22 6.6
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 21 8.7
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 26.6 bits (56), Expect = 0.23
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 269 APPIRHIVYPRQSSTSLFGYLPRAVHSDVWLTLSHNPIRTTHFNNLF-ILYIHMHSVL 99
AP +H+++P + L+G P + + P+ FN ++ I+Y+H+ V+
Sbjct: 380 APAPQHLIHPGKDINKLYGMTPSDIDKYSRIVF---PVCFVCFNLMYWIIYLHISDVV 434
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 26.6 bits (56), Expect = 0.23
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 269 APPIRHIVYPRQSSTSLFGYLPRAVHSDVWLTLSHNPIRTTHFNNLF-ILYIHMHSVL 99
AP +H+++P + L+G P + + P+ FN ++ I+Y+H+ V+
Sbjct: 380 APAPQHLIHPGKDINKLYGMTPSDIDKYSRIVF---PVCFVCFNLMYWIIYLHISDVV 434
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 24.2 bits (50), Expect = 1.2
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -2
Query: 397 SNPYSCNCK-IRGKSNW 350
SNP+SC CK ++ S+W
Sbjct: 923 SNPWSCRCKFLQELSSW 939
Score = 22.6 bits (46), Expect = 3.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -2
Query: 409 FHSRSNPYSCNCKI 368
F+ NP++CNC +
Sbjct: 675 FYIGGNPFNCNCSM 688
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 2.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -3
Query: 132 IHPLYSHALC 103
+HPLY H +C
Sbjct: 274 VHPLYGHGVC 283
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.6 bits (46), Expect = 3.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 677 KAIVKHTNPFWMYLTLILKAPLKVKF 600
K I KH W +L LI PL F
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIF 183
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.6 bits (46), Expect = 3.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 677 KAIVKHTNPFWMYLTLILKAPLKVKF 600
K I KH W +L LI PL F
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIF 183
Score = 21.8 bits (44), Expect = 6.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 260 WEERIILPNTD*RAP*ASFTAIKSNNAQMSPVTLAT 367
WEE IL N + A N ++ SPV AT
Sbjct: 232 WEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKAT 267
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.6 bits (46), Expect = 3.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 677 KAIVKHTNPFWMYLTLILKAPLKVKF 600
K I KH W +L LI PL F
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIF 183
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.2 bits (45), Expect = 5.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 269 APPIRHIVYPRQSSTSLFGYLP 204
AP +H+++P + L+G P
Sbjct: 318 APAPQHLIHPGKDINKLYGMTP 339
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 472 ECPMNTVFNPEDGLC 516
+CP N +F+ DG C
Sbjct: 36 KCPSNEIFSRCDGRC 50
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 472 ECPMNTVFNPEDGLC 516
+CP N +F+ DG C
Sbjct: 36 KCPSNEIFSRCDGRC 50
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 21.4 bits (43), Expect = 8.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +3
Query: 177 QPNIAMYCPWKIS 215
QPN YC W+++
Sbjct: 5 QPNRPSYCTWELN 17
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,625
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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