Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c06
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   3.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   4.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   5.5  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.6  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   9.6  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    25   9.6  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 692 SSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSD 808
           S +  L  S C ++ I  N F ++  L+ L+++GN L++
Sbjct: 332 SQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTE 370


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 665 GSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSD 808
           G+E  +L    V   D++    +  +  +F N+  L YL+++ N L D
Sbjct: 635 GNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLED 682


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 173 FGESINKTVKKDKDADNLLDQYEDYEP 253
           FG S N T    KDA   LD Y++Y P
Sbjct: 379 FGNSYNVTRILTKDATFDLDAYQNYSP 405


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 370 LCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLV 260
           LC ++E   L   +SL +RAY    T P L   + L+
Sbjct: 414 LCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLI 450


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 707 LDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSD 808
           L++SY  +  I +  F+N   L +L V+GN L++
Sbjct: 835 LNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELAN 868


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 446 MFKKLGLHQVATVKIVNSTIGYIAPNAFH--GVHDLYAVNLSNNNLKSLHP 592
           +FKKLG++ V   ++ NS       NA    G++ +  +N   +++   HP
Sbjct: 74  IFKKLGINTVRVYQVDNSADHDKCMNALSEAGIYVILDLNTYRHSISRAHP 124


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 365 YRFRGSCTWLVCIPEIQSICSL-WDRACPRCTKP 267
           Y    + TW     ++  IC + +D  CP+CT P
Sbjct: 8   YHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,776
Number of Sequences: 5004
Number of extensions: 63984
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)