Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c06
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.15 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 24/114 (21%), Positives = 44/114 (38%)
 Frame = +2

Query: 461 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXXX 640
           GL  + T     +++  +    F    DL  ++L+ N L+ L    F             
Sbjct: 259 GLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318

Query: 641 XXXXFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNL 802
                     E  FL    +  L++SY  + +I A  FK++  L  L++  N++
Sbjct: 319 NRLGSDRV-DETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSI 371


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 191 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 307
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 309 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 347


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 191 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 307
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 224 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 262


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 191 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 307
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 543 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 581


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 182 SINKTVKKDKDADNLLDQYEDYEPAEYQE 268
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 182 SINKTVKKDKDADNLLDQYEDYEPAEYQE 268
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 182 SINKTVKKDKDADNLLDQYEDYEPAEYQE 268
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,581
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)