Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c05
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    26   4.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   4.6  
SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.1  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   8.1  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 156 PSNTPLFGSTKAH*LTPFLKN 94
           PS++PL  STKA   TPF++N
Sbjct: 37  PSSSPLASSTKASTSTPFVEN 57


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
 Frame = -3

Query: 484 VIKPRVTIRAAETPSPQSTVHPTASKNADRNELSSPLYTNIESLYI*TQHTRNMRIPTRI 305
           ++K  V   +A  PSP S ++ +   NAD  E  + L  N  +  +  +   ++ +    
Sbjct: 444 LLKNEVARLSAICPSPNSGINASVLTNADNLEKENLLLVNNNAFKVDDRSVSSVALDDHN 503

Query: 304 T*LQ*NLEAHETSSCPSSCHTPFENSKQFPLNSSWCILIGTI-TQSDSMRPIKYPAIWLN 128
             LQ N+E  E      +      +     LN+++ +L   + T+  +++ I+   I L 
Sbjct: 504 RQLQMNVEELEGKKADLTSKINRLDKDFVKLNTTYSLLTDQVKTKQLALQEIESRVIRLE 563

Query: 127 KSTLVNAISKKRLQ 86
           +   +N + K  +Q
Sbjct: 564 ER--LNMLQKLSMQ 575


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 496 LSHQVIKPRVTIRAAETPSPQS-TVHPTASKNADRNELSSPL 374
           LSH++ +PRVT        P S ++H  +S   D + L + L
Sbjct: 259 LSHKLTRPRVTASGNSRRRPLSRSIHSLSSSRIDFSSLDTGL 300


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 573  GFYMEIGTAQFGAWAAFATWVGL-AVFSTLKVCRYHQLQNIQVSMY 707
            GF++      F         + L A+++ + VCRY Q  ++  S+Y
Sbjct: 1174 GFHVNNMVIMFSLQLLMLVIINLGAMYTVVPVCRYRQFDSLTASLY 1219


>SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 73

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 429 VLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDIDTKDK 560
           +L G+  S A+  T+G+  + D  I R PS    T Q  +TK K
Sbjct: 26  ILIGIAGSTAIF-TMGYKIYSDPEIRRSPSWVAQTQQKEETKVK 68


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 235  ENSKQFPLNSSWCILIGTITQSDSMRPIKYPAIW 134
            EN++   L + WC  +   T  DS   ++YP I+
Sbjct: 1865 ENNQILELIAGWCEHLAQNTWGDSTISLEYPGIY 1898


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = +3

Query: 93  RFLEMALTNVLLLSQIAGYLMGLILSLCVIVPM-------SMH--QDEFSGNCLLFSKGV 245
           R L  A  N+ L +Q    ++  +   C+   +        +H  Q  +S   L FSKG 
Sbjct: 448 RHLRAAEKNIALNTQPPAQILNRLYFFCIQTQLLEVAQCAELHAVQGYYSFPYLTFSKGK 507

Query: 246 WQEDGQLL 269
           W++DG  L
Sbjct: 508 WRKDGDSL 515


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 331 LCAAFRYTDS-QCWCTKGRIAHFCRHSWRLLDVLCS 435
           L A FR  +  Q W T+GRI H    + +L+  L S
Sbjct: 32  LAALFRGVEIIQAWSTRGRIPHSVESTSQLVSSLIS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,429
Number of Sequences: 5004
Number of extensions: 70196
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)