Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c05
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   0.46 
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    31   1.1  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical...    30   1.9  
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical ...    29   3.3  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    29   4.3  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       29   4.3  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    29   4.3  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    29   4.3  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    29   4.3  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.1 bits (57), Expect(2) = 0.46
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 604 NCAVPI-SI*KPTVEILSFVSMS*PVASSQLGNRSMMLSHQVIKPRVTIRAAETPSPQST 428
           N A P+ ++  P    L  ++   P   + +  + ++++    +P  T    ETP+P+ST
Sbjct: 86  NPAPPLPTLPTPPPSTLPPITYPRPTVGAPITTQQVLITETTTQPPTTTTTLETPAPEST 145



 Score = 23.4 bits (48), Expect(2) = 0.46
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 448 TPSPQSTVHPTAS-KNADRNELSSPLYTN 365
           TP+P++TV PT      +R + S   Y N
Sbjct: 156 TPAPETTVAPTTKYLRPERKQTSKAKYFN 184


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 333 VCCVQIYRLSMLVYKGEDSSFLSAFLEAVGCTVLCGLGVSAALMVTLGFMTWCDNII 503
           + CV +Y +    +K +D+S+  AFL +  CT L           +L  MT C N+I
Sbjct: 133 IWCVVLYEIVACHFKYDDASWSLAFLPSKKCTRLTWYS-DFTFNTSLVVMTLCTNLI 188


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +2

Query: 68  LGYILLL*SFFRNGVN*CAFVEP---NSGVFDGPHTVALCYCSNEYAPGRIQWELLAV 232
           + Y+L+L + F  GV  CA   P      V  G + + L  C  E   G I W  L V
Sbjct: 268 IAYVLMLCTLFEGGVEKCALYYPEKLGEVVKFGKYEITLTECKEEAIAGTI-WNALTV 324


>AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical
           protein C34B2.9 protein.
          Length = 213

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 442 SPQSTVHPTASKNADRN-ELSSPLYTNIESL 353
           SP STV  ++S ++  + EL+SP+Y N+E L
Sbjct: 13  SPTSTVSTSSSSSSSSSSELASPVYENVEEL 43


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 465 PSGQQRLQARRAQYIQQPPRMPTEMSYPP 379
           P  QQ  QA +  Y QQPP+ PT+ + PP
Sbjct: 54  PQSQQAPQAPQG-YPQQPPQDPTQYAQPP 81


>AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical
           protein Y119C1B.12 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 180 IVPMSMHQDEFSGNCLLFSKGVWQEDGQLLVSWASRFYCNY-VILVGILMFLVCCV 344
           IV ++M      G   +FS          L+ W S  YC   +I+  IL+ +VCCV
Sbjct: 106 IVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYWTSFIYCILGLIVFAILLLVVCCV 161


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -3

Query: 217 PLNSSWCILIGTI---TQSDSMRPIKYPAIWLNKSTLV---NAISKKRLQEQYIS*QKVI 56
           PLN  W +   T    + + S  PIK P++ LN+ST V    ++S  R+     S +   
Sbjct: 270 PLNPDWTVTAATSFKHSHTFSADPIKDPSVLLNRSTSVRVRGSLSTPRIPTHRDSYRSAT 329

Query: 55  KH*TLILEEKPGAEN 11
           K  T+  +  P   N
Sbjct: 330 KPDTVPKQTPPPTHN 344


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 271 TSSCPSSCHTPFENSKQFPLNSSWCILIGTITQSDSMRPIKY 146
           +S C        +  K+FP+NS++  LI   T +DS R I+Y
Sbjct: 522 SSFCTERLSRCIQREKRFPINSNFASLITVDTMTDS-RQIQY 562


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 271 TSSCPSSCHTPFENSKQFPLNSSWCILIGTITQSDSMRPIKY 146
           +S C        +  K+FP+NS++  LI   T +DS R I+Y
Sbjct: 522 SSFCTERLSRCIQREKRFPINSNFASLITVDTMTDS-RQIQY 562


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 271 TSSCPSSCHTPFENSKQFPLNSSWCILIGTITQSDSMRPIKY 146
           +S C        +  K+FP+NS++  LI   T +DS R I+Y
Sbjct: 522 SSFCTERLSRCIQREKRFPINSNFASLITVDTMTDS-RQIQY 562


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 271 TSSCPSSCHTPFENSKQFPLNSSWCILIGTITQSDSMRPIKY 146
           +S C        +  K+FP+NS++  LI   T +DS R I+Y
Sbjct: 522 SSFCTERLSRCIQREKRFPINSNFASLITVDTMTDS-RQIQY 562


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -3

Query: 487 QVIKPRVTIRAAETPSPQSTVHPTASKNADRNELSSPLYTNIESLYI*TQHTRNMRI 317
           Q+  PR  IR+A  P P ST+ P    ++     ++P+Y +++       +++N RI
Sbjct: 203 QLKPPRPPIRSA-VPDPPSTIPPPVPISSPPQIYATPIYEDLQKASNPYVNSKNNRI 258


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 259 PSSCHTPFENSKQFPLNSSWCILIGTITQSDSMRPIK 149
           P   H PF+N+ +FPL +S+   I     S+ MR +K
Sbjct: 141 PLLTHHPFDNTCKFPLPNSYAEDIIPFHLSERMRQLK 177


>AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical
           protein Y48C3A.9 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 711 PGTSRPGCSAAGGNDTLSVLKIQPDPPMSRMLP 613
           PG   PG  A GG    +     PDP + RM P
Sbjct: 140 PGRMPPGAMAPGGMPPGAFPMFPPDPRLQRMAP 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,302
Number of Sequences: 27780
Number of extensions: 408432
Number of successful extensions: 1403
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)