Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c05
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.40 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 267 LVSWASRFYCNYVILVGILMFLVCCVQIYRLSM-LVYKGEDSSFLSAFLEAVGCT 428
           +VS +  FY   ++++GI   L C  Q +  S+  V K  D+S   +F+  V  T
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVHAT 248


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 416 CWMYCALRAWSL 451
           C+MYC L A+SL
Sbjct: 72  CYMYCLLEAFSL 83


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 416 CWMYCALRAWSL 451
           C+MYC L A+SL
Sbjct: 72  CYMYCLLEAFSL 83


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 427 VHPTASKNADRNELSSPLYTNI 362
           VHP+A+ + D N++ S  YT +
Sbjct: 139 VHPSATFSLDLNKVVSVFYTAV 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 414 PPRMPTEMSYPPLC 373
           PP++PTE S   LC
Sbjct: 454 PPQLPTEESVDALC 467


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 228 LFSKGVWQEDGQLLVSWASRFYCNYVILVGILM-FLVCCVQIYRLSMLV 371
           LF  GV+ +     V  AS    +YV+L GIL+ +LV    + R + +V
Sbjct: 672 LFVCGVFLKHNDTPVVRASGRELSYVLLSGILLCYLVTFALVLRPTDIV 720


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,012
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)