Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29c01
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   204   1e-53
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.25 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   5.4  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   7.1  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   9.4  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.4  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   9.4  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  204 bits (497), Expect = 1e-53
 Identities = 102/209 (48%), Positives = 132/209 (63%), Gaps = 2/209 (0%)
 Frame = +3

Query: 153 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 332
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 333 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 512
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124

Query: 513 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNS 686
           +Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A++  I R  QD +A++S
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISS 184

Query: 687 YKRSAAAYEAKAFVDELVPVPVPQKRGAP 773
           YKR+  A   KAF  E+VPV VP  RG P
Sbjct: 185 YKRAQNAQATKAFEQEIVPVEVPVGRGKP 213


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 393 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 506
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 178 LTADAITTSLRETLVENAAIAVNIGFILMLIILFPFKKIMIYSLQIYFEYSRT 20
           +T+D +  +LRETLV N A +  +   L   +     +I I +L IY E  +T
Sbjct: 229 ITSDDLKIALRETLVANDAFSKLLLPALFERLKASTVRIKIDALNIYIEACKT 281


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 353 CNICRFAKKYHMYNCKQSMC 412
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 589 MCTTNFTWEIVLKTQQKNYKLLDKIKMNMLSIVTREV 699
           +  + + W +  KT++  YKL+    M + S+V  E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 90  NIKMKPIFTAMAAFSTKVSLNEVVIASAV 176
           N K    F   +AFST +SLN+ ++ S +
Sbjct: 256 NFKCLDAFDLRSAFSTYLSLNQPMVVSVI 284


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 305 WQCLFCKFGPSTCKTSCNICRFAKKYHM 388
           W C  C F     +TSC  C F    H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 428 RFHARGTYFVYSCTYGTF 375
           RF  R  Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,744
Number of Sequences: 5004
Number of extensions: 62325
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)