Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b23
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   1.6  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   3.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.6  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   3.6  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   8.4  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 518 DRLLQRWYREGQPRDIGSEGPDQRDTSIS 432
           DR+  RW R+G   D+G +     D S+S
Sbjct: 445 DRIHNRWRRKGHDSDLGFDFETDEDASLS 473


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  HPSNAPHVATL*SFLNASLLMEII 82
           +P NAPH +   SF+ A+ L EI+
Sbjct: 187 YPKNAPHASKTMSFILANQLSEIV 210


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 152 LKLFRHEVSPVAALLGVCCDV 214
           L L R+ VSPV  +  VCCD+
Sbjct: 466 LVLSRNAVSPVPQVFEVCCDI 486


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 313 WPAPSKASTIPLPRELWLREGIG 245
           WP+ SK  T+ + R LW+ E  G
Sbjct: 92  WPSASKNDTLRVVRGLWMYEDTG 114


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 215 SARVPRALRVPDTFTQPQLPRQRDSRR 295
           +++V   L  P    QPQLP++ DS+R
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQR 346


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = +1

Query: 475 SRGCPSRYQ----RCSRRSS 522
           SR CPS+YQ    RC+R SS
Sbjct: 410 SRSCPSKYQCYSCRCARNSS 429


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 532  YFPLTIACCSAGTERDSLVILAAKVLINA 446
            YFP+   C    TER  L++ + K ++ +
Sbjct: 947  YFPILKLCAEPSTERHVLLVTSLKTMLTS 975


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 478 VILAAKVLINAIPASAFLWSFMSIISLTEAVALTSIIFRPLVDSLGGNG 332
           V+L   +L+N +P   + W F + + L     + +II+ P+  S   +G
Sbjct: 216 VLLVFTILLNQVPPRYYKWIFKASMLLMFIDYVMNIIWVPVATSKKPDG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,973
Number of Sequences: 5004
Number of extensions: 59695
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)