Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b21
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     30   1.7  
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    28   9.2  

>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 663 QHSVSGTLLLHFSVDSMRSHAFRKKCSTF 749
           + SV+ +L  HFSV   R+  FRKK  +F
Sbjct: 201 RRSVASSLYSHFSVSKRRTEFFRKKAESF 229


>02_02_0574 - 11701359-11701460,11701469-11701570,11701725-11701922,
            11702090-11704052,11705312-11706126
          Length = 1059

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 162  WLIWKPVCFSIPYETSRKLVYRLIV 236
            W  W    +S PY T  K +YR I+
Sbjct: 1028 WAFWTTTGYSFPYSTEEKQLYRGIL 1052


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,458
Number of Sequences: 37544
Number of extensions: 261640
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)