Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b21
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 114 IKDNFVISF*IIFRVTWLIWKPVCFSIPYETSRKLVYRLIVSHYCD 251
           +K+ F + F +I  V  L  + +CF     TS   +YRL +  +CD
Sbjct: 4   MKNIFPVLF-VIINVL-LHGQVICFVCKDITSTSALYRLKLYLFCD 47


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 309 VCTCFVFLMLLHTIVV 356
           VC CF++  LL  + V
Sbjct: 369 VCMCFIYASLLEFVCV 384


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 309 VCTCFVFLMLLHTIVV 356
           VC CF++  LL  + V
Sbjct: 338 VCMCFIYASLLEFVCV 353


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 309 VCTCFVFLMLLHTIVV 356
           VC CF++  LL  + V
Sbjct: 389 VCMCFIYASLLEFVCV 404


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 309 VCTCFVFLMLLHTIVV 356
           VC CF++  LL  + V
Sbjct: 338 VCMCFIYASLLEFVCV 353


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 306 AVCTCFVFLMLLHTIVV 356
           +VCT FVF+ L+   +V
Sbjct: 312 SVCTVFVFMALMEYCLV 328


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 133 FHFKLSFELRGLYGNQFAFRYHMRLH 210
           FH + + +    YGN+F+  Y +  H
Sbjct: 421 FHVQETDKYDAYYGNRFSGEYEIPAH 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,549
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)