Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b18
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   0.001
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.30 
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   3.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.6  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   4.8  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   8.4  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 168 NRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEE 326
           +R+     P +   +P G+ P++  DG  Y +S AI  +L RKYG +    EE
Sbjct: 32  DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 341 VDLEGLLVIGPGEPVLATEVPADGGA 264
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 477 EILTKNNGHIALGKLTWGDFVYAGMYDYLKAMLQKPDL 590
           +I+TKN   I L    W D++Y+   D+    +QKP L
Sbjct: 302 QIITKNRTSIRL----WIDYLYSTAVDFYTNWIQKPIL 335


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +1

Query: 67  TRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKST 246
           +R   T+S+  + S  S        +T+   S T++       +S++   S       S+
Sbjct: 581 SRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHS---SSS 637

Query: 247 ASSTLRAPPSAGTSVA 294
            SS++  PPSAG+S +
Sbjct: 638 RSSSMSLPPSAGSSTS 653


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 534 FVYAGMYDYLKAMLQKPDLEQ 596
           FV  G+YDY+ +M  K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = +1

Query: 76  CRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASS 255
           C +   T +   P++  R C      R  KT++  +  G + N  LR +      STA  
Sbjct: 280 CDSCGGTGTTIPPNSACRSCMGSGTVRERKTVSIDIPPGIDDNTVLRVMGAGNDASTAKG 339

Query: 256 TLRAPPSAGTSVAS 297
              A    G   A+
Sbjct: 340 GPNAKSRPGDLFAT 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,059
Number of Sequences: 5004
Number of extensions: 41154
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)