Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b10
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/51 (25%), Positives = 19/51 (37%)
 Frame = +2

Query: 521 VICKQYGRRPLCFISGGLTTISMVGLSMFLYLKPENMAWIPLSCLMLYICA 673
           +IC  YG         G  T+S+      +  + +   WIP     LY  A
Sbjct: 384 LICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQTEVWIPKWRQFLYCLA 434


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 600 DSPTIEIVVKPPLMKHKGLRPYCL 529
           D+ T+EIV++P    +  L+ YC+
Sbjct: 304 DAYTVEIVLEPGTGINVTLKGYCI 327


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 533 QYGRRPLCFISGGLTTISMVGLSMFLYL 616
           +YG   L ++SG +TT      ++FLY+
Sbjct: 226 RYGFSFLLYVSGFITTEVAGTYAIFLYI 253


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -1

Query: 147 KISKTIFNIGNRAQMTAVHCXDMNVPRICAKIMPNAIASEIAAR 16
           ++   +++   R+   +VH  D+NV  + A+     +  E A R
Sbjct: 73  EVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIR 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,165
Number of Sequences: 438
Number of extensions: 4228
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)