Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b08
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...   116   5e-27
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    97   3e-21
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    54   3e-08
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.13 
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.9  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score =  116 bits (278), Expect = 5e-27
 Identities = 57/64 (89%), Positives = 60/64 (93%)
 Frame = +2

Query: 2   GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 181
           GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQPRLFV MILILIFAEVLGLYGLIV
Sbjct: 88  GFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIV 147

Query: 182 AIYL 193
           A+ L
Sbjct: 148 ALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 45/64 (70%), Positives = 54/64 (84%)
 Frame = +2

Query: 2   GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 181
           GFIHL AGLAVG +G+AAG+AIG+VGD GV+   +Q R+FV M+LILIFAEVLGLYGLIV
Sbjct: 90  GFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIV 149

Query: 182 AIYL 193
            + L
Sbjct: 150 GLIL 153



 Score = 32.3 bits (70), Expect = 0.077
 Identities = 13/59 (22%), Positives = 33/59 (55%)
 Frame = +2

Query: 17  GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 193
           G   ++ FS L AG+   + G       A +P + +  ++ ++ + ++G+YGL++++ +
Sbjct: 17  GVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLI 75


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 35/64 (54%)
 Frame = +2

Query: 2   GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 181
           GF     G+ VG   L  G  +GI G +     AQ   LFV ++++ IF  VLGL+GLIV
Sbjct: 128 GFALFWGGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIV 187

Query: 182 AIYL 193
            + +
Sbjct: 188 GLLI 191



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +2

Query: 14  LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 187
           LG    V F  + A + I I G + + G  + PR+    ++ +IF EV+ +Y LI+AI
Sbjct: 48  LGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAI 105


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 171  P*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 1
            P RP ++A  ++   PT      +VP  P++P MP   P+A P    A  AP   NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -2

Query: 199 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 92
           C++VD +D K +  K+QY +EN N N  +  P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 102 AVPRTPAS--PTMPMAKPAARPENPTAKPAP 16
           A P  P S  P++PM  PAA P  P+A  AP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 593 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 685
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -3

Query: 102 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 13
           +VP+ PA+P +P A    +P A P  P    AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 619 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 527
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,237
Number of Sequences: 5004
Number of extensions: 65145
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)