Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b07
         (777 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    25   2.6  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    25   2.6  
AJ439061-1|CAD27770.1|   89|Anopheles gambiae hypothetical prote...    25   2.6  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             25   3.5  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   8.0  

>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 121 RSTSHVESTIFYFCFTINTSLAVRSGYVGTAFSVHGVNTT 2
           R  SH +S++   C   NT+      Y+   F+ H  + T
Sbjct: 36  RQGSHAKSSVHKLCHARNTTQPRTRWYIPAFFAAHPTDRT 75


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 121 RSTSHVESTIFYFCFTINTSLAVRSGYVGTAFSVHGVNTT 2
           R  SH +S++   C   NT+      Y+   F+ H  + T
Sbjct: 36  RQGSHAKSSVHKLCHAKNTTRPRTRWYIPAFFAAHPTDRT 75


>AJ439061-1|CAD27770.1|   89|Anopheles gambiae hypothetical protein
           protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 121 RSTSHVESTIFYFCFTINTSLAVRSGYVGTAFSVHGVNTT 2
           R  SH +S++   C   NT+      Y+   F+ H  + T
Sbjct: 36  RQGSHAKSSVHKLCHAKNTTRPRTRWYIPAFFAAHPTDRT 75


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 451 IHNALLDALAVGEEEDANHHLHN 383
           IH+ALL+A+  G  E     LHN
Sbjct: 924 IHDALLEAVICGSTEVPARSLHN 946


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +2

Query: 557 GAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKW-NKPIAGV 724
           GA+ YG        C+           NCTV+  +   G  + ++   W + PI GV
Sbjct: 128 GAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES--YGYTVSDVVMYWRSTPIRGV 182


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,859
Number of Sequences: 2352
Number of extensions: 14527
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)