Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b07
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    81   9e-18
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 81.4 bits (192), Expect = 9e-18
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 2/225 (0%)
 Frame = +2

Query: 107 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 286
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 287 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVL 466
           ++FVI+F GCCGAIRESHCM +T+A                 F   ++  +     +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKN--DDNFRNISEK 118

Query: 467 FKKRSDANADEAAEAVFSE-LQRQFECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNC 643
           +++  +     +    F + +Q+  +CCG     +Y    +P SCC      ++   N C
Sbjct: 119 YQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC------NSPENNTC 172

Query: 644 TV-DAANPGCGPKIGELYQKWNKPIAGVALGVACVEVVGALFALC 775
           ++ ++   GC   + +  +        VA+ +A VE++G + ALC
Sbjct: 173 SISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALC 217


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 470 KKRSDANADEAAEAVFSELQRQ 535
           +KR DA  DE+ EA+F  + RQ
Sbjct: 292 EKRDDAK-DESVEAIFQSILRQ 312


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 581 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGEL 691
           T  ESC V   I + + G N  +  A    G KI EL
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICEAFVKTGKKISEL 288


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 705 FHFW*SSPILGPQP-GFAASTVQLLPAK 625
           F FW S  ++GP+P  F  +T  L+  K
Sbjct: 26  FDFWKSRGVVGPKPVPFFGTTKDLILVK 53


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 434 KESIMDGVGVLFKKRSDANADEAAEAVFSELQR 532
           K S+M   G+  +     + DE    VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = -3

Query: 400 NHHLHNDDHQ-QEDCVRDDH 344
           +HHL N  H  Q   V+D H
Sbjct: 141 HHHLQNHHHHLQSTAVQDHH 160


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 143 IAHISQNSFHIPC*EHYFLFLFHN 72
           I + S +SF+IPC     +FL++N
Sbjct: 344 IIYSSLSSFYIPC--IIMVFLYYN 365


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 340 LHGRHVRNLLAGDHHCAS 393
           LH   ++N+   DHH AS
Sbjct: 349 LHSFQMKNVTIVDHHTAS 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,877
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)