Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b03
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.14 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.73 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.7  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.2  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   6.8  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   6.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 38/146 (26%), Positives = 69/146 (47%)
 Frame = -1

Query: 670 VLSLLT*KSRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFSSTQSL 491
           V S+L+  + S  S S ++   +     +   T++ + +S S  + S +      ST SL
Sbjct: 576 VSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635

Query: 490 IDLAATVFFEKSMFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLA 311
           +  ++++    S   +S + T   +++          TY+   I SS+ L+   S L+++
Sbjct: 636 MISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSSSLIVS 687

Query: 310 NSVRIASSSGKPIAFKSSSWVSPSEA 233
           +S  +ASSS  PI   SSS VS   A
Sbjct: 688 SS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -1

Query: 445 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 266
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 265 KSSSWVSPSEA 233
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 309 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 404
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 579 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 674
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 23  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 121
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 468 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 557
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,556
Number of Sequences: 5004
Number of extensions: 60504
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)