Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29b03
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 94 1e-19
01_01_1152 + 9170628-9171899 78 9e-15
11_02_0011 - 7337618-7338496,7338596-7338991 75 8e-14
04_04_0619 + 26652923-26653267,26653440-26654273 75 8e-14
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 73 3e-13
11_01_0767 + 6438648-6438809,6439146-6440000 71 8e-13
11_02_0012 - 7346282-7347136,7347234-7347593 71 1e-12
11_01_0750 - 6315126-6315896,6316371-6316784 69 3e-12
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 68 1e-11
11_02_0014 - 7352619-7352918,7353173-7353418 65 7e-11
11_01_0771 + 6453130-6454488 57 2e-08
05_06_0044 - 25150322-25151260 52 7e-07
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 2.3
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 3.1
05_05_0373 - 24478361-24479383 29 4.1
02_01_0384 - 2781362-2782299,2782320-2782428 29 4.1
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 5.4
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 7.1
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 9.4
01_06_0373 - 28841462-28842850 28 9.4
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 93.9 bits (223), Expect = 1e-19
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 9/203 (4%)
Frame = +3
Query: 177 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 332
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 333 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 509
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 510 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 689
T RIKD + D++ AT AVL NA+YFKG W SKFD R TSD FY+ + P M
Sbjct: 152 ATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM 211
Query: 690 YKRGDYKYGESAALNAQLIEIPY 758
G ++Y A +++ +PY
Sbjct: 212 -SSGKWQYIACRA-GYKVLRLPY 232
>01_01_1152 + 9170628-9171899
Length = 423
Score = 77.8 bits (183), Expect = 9e-15
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 2/198 (1%)
Frame = +3
Query: 174 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 350
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 351 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRI 527
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 SF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 528 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDY 707
+D++ P+S+ S+T VL NA++FKG WS F T F++ ++ P M +
Sbjct: 176 RDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFMTTEIPF 235
Query: 708 KYGESAALNAQLIEIPYK 761
+ +A +++PYK
Sbjct: 236 ERHVAAFPGFTALKLPYK 253
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 74.5 bits (175), Expect = 8e-14
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 5/199 (2%)
Frame = +3
Query: 177 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDLRSIK 344
K++V S S+ LA +A + G T +ELL +G DD +++R D +
Sbjct: 31 KNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 345 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNN 521
G + A V+ + +L + + + + + +F + + K IN WV + TN
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 522 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRG 701
I +++ S+ TA VLVNAIYFKG WS+ F T+ F+ ++ VP M R
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSRE 210
Query: 702 DYKYGESAALNAQLIEIPY 758
D G ++++PY
Sbjct: 211 DQYIGFHDGFT--VLKLPY 227
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 74.5 bits (175), Expect = 8e-14
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
Frame = +3
Query: 216 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGK 395
LA LA +DGET +LL +G + A ++R+ +L A ++V +
Sbjct: 33 LALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP--QLSFAAGIFVDRSLR 90
Query: 396 LDENFAVVSRDVFNSDVQNIDFSKNT-VAAKSINDWVEENTNNRIKDLVNPDSLSSATAA 572
L F + + +++DF AA +N ++ + TN R+ + ++P + S+T
Sbjct: 91 LRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPGTFGSSTKC 150
Query: 573 VLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEI 752
VL NA++FK W KF+ T R F+ + VP + + L +++++
Sbjct: 151 VLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFLSDPRTHYAARFDGLGFKVLQL 210
Query: 753 PYK 761
YK
Sbjct: 211 FYK 213
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 72.9 bits (171), Expect = 3e-13
Identities = 36/99 (36%), Positives = 58/99 (58%)
Frame = +3
Query: 465 KNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDR 644
K A +N WVE+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D
Sbjct: 209 KAAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDG 268
Query: 645 DFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYK 761
+F++ K+++ P M +Y S N +++++PY+
Sbjct: 269 EFHLLDGKSVQAPFM-STSKKQYILSYD-NLKVLKLPYQ 305
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/90 (35%), Positives = 55/90 (61%)
Frame = +3
Query: 489 INDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDK 668
+N WV+ T+ IK++ P S++ T VL NA+YFKGAW+ KFD T D +F++ +
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGE 528
Query: 669 TIKVPMMYKRGDYKYGESAALNAQLIEIPY 758
+++ P M R K S+ + +++++PY
Sbjct: 529 SVQAPFMSTR--KKQYLSSYDSLKVLKLPY 556
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 71.3 bits (167), Expect = 8e-13
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Frame = +3
Query: 432 FNSDVQNIDFSKNTVAA-KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAW 608
+ +DF + V A K IN WV T N I +++ P+S S T V+ NAIYFKG W
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW 101
Query: 609 SSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYK 761
+ FD+ T++R+F +++VP M + + + +++ +PYK
Sbjct: 102 LAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYHHVACHDGFRVLRLPYK 152
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 70.5 bits (165), Expect = 1e-12
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 5/203 (2%)
Frame = +3
Query: 165 NNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDL 332
+N ++VV S S+ LA +A + G T +EL+ +G DD +++R D
Sbjct: 27 DNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADE 86
Query: 333 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 509
G + A V+ HD E A+ + + + DF + ++ K IN WV +
Sbjct: 87 SESGGPRVSYACGVW-HD-----ERLAL--KPAYRA----ADFQRQPKSSRKKINKWVSK 134
Query: 510 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 689
TN I++++ S+ TA VLVNAIYFKG WS+ F T+ F+ ++ P M
Sbjct: 135 ATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFM 194
Query: 690 YKRGDYKYGESAALNAQLIEIPY 758
R D G +++++PY
Sbjct: 195 SSREDQYIGFYDGF--KVLKLPY 215
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 69.3 bits (162), Expect = 3e-12
Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 12/206 (5%)
Frame = +3
Query: 180 SVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDD----AIRTEFASKS-----RDL 332
+ +SA +V LA A + G T ++L+A+G A AS+ RD
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 333 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 509
+ G L A V+ L F ++ +V+ S + DF +K A IN WV++
Sbjct: 93 STSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKD 152
Query: 510 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 689
+T + L+ ++ T VL +A+YF+G W + D R T+++ FY +++VP +
Sbjct: 153 STKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
Query: 690 YKRGDYKYGESAAL--NAQLIEIPYK 761
+Y A+ N ++I++PYK
Sbjct: 213 ----EYDRTRLFAVHDNFKVIKLPYK 234
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 67.7 bits (158), Expect = 1e-11
Identities = 33/94 (35%), Positives = 54/94 (57%)
Frame = +3
Query: 480 AKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 659
A +N WV+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D +F +
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLL 65
Query: 660 KDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYK 761
K++ P M K S+ + +++++PY+
Sbjct: 66 DGKSVLAPFM--STSKKQYLSSYDSLKVLKLPYQ 97
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 64.9 bits (151), Expect = 7e-11
Identities = 34/94 (36%), Positives = 48/94 (51%)
Frame = +3
Query: 483 KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSK 662
K IN+WV + TN I +++ S+ T VLVNAIYFKG WS F T+ F+
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLD 147
Query: 663 DKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKG 764
++ V M R D G N ++++PY G
Sbjct: 148 GSSVNVRFMRSREDQYIGFYDGFN--VLKLPYNG 179
>11_01_0771 + 6453130-6454488
Length = 452
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = +3
Query: 396 LDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAV 575
+D ++ + + V ++ K A K IN W T I D++ P S+ TA V
Sbjct: 146 IDAFILLLDPSMIDQCVLDLVSEKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVV 205
Query: 576 LVNAIYFKGAWSSKFDERLTSDRDFY 653
L NAIYFKG W F+E T + FY
Sbjct: 206 LGNAIYFKGKWDRPFNESDTERKPFY 231
>05_06_0044 - 25150322-25151260
Length = 312
Score = 51.6 bits (118), Expect = 7e-07
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Frame = +3
Query: 372 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDLVN-- 542
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+++
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILSNS 59
Query: 543 ----PDSLSSATAAV-----LVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 689
D A+ L N++YF W F LT + DF+VS D ++VP M
Sbjct: 60 IDDDDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 368 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 234
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 285 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 410
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>05_05_0373 - 24478361-24479383
Length = 340
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 474 VAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLV 581
VA + +DW E + ++ D V PD+LSS AAV +
Sbjct: 153 VALREPHDWGESTAHAQL-DAVAPDALSSCDAAVFL 187
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -1
Query: 355 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 188
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 303 TEFASKSRDLRSIKGVELKMANKVYVHDG 389
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 343 LIDRRSRLLLANSVRIASSSGK 278
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 304 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 471
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 186 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 329
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,033,781
Number of Sequences: 37544
Number of extensions: 383279
Number of successful extensions: 1121
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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