Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b01
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   1.7  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   3.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   LRECLQHRLLVLSSPHLTRTVHSHLKWRNAH 100
           LR  L+H LL   S  L + + S LKWRN H
Sbjct: 365 LRCALRHELL---SAGLQKAIDSLLKWRNRH 392


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 84  SGGTLTNNKEEAHQIVTGKLYAVGSATPPSERRLSVPA-TTIQS 212
           +GGT+TN   E  Q +T  L A  S T P    + +P  +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366



 Score = 24.6 bits (51), Expect = 9.3
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = -2

Query: 413 SSIARSKSAFSEXEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGS 240
           +++     AF+   P SGS      E   P+   +    +      TS L    G  PG+
Sbjct: 295 TTLQSGSQAFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGT 353

Query: 239 VSTILCGRAALYGG 198
           V  IL G + +Y G
Sbjct: 354 VEVILPGPSTIYSG 367


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 395 KSAFSEXEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 264
           KS  S     SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 277 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPV 131
           LH + ED+ + G FL S A  R+C   +   + +    + L + +  P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 254 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 156
           + PGS   +L G A L G  G   +S+  G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 238 FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTI 125
           ++PS AGG  C+ ++   K   L  + + + + +P  I
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFII 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,916
Number of Sequences: 5004
Number of extensions: 45886
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)