Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29b01
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    35   0.047
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412...    33   0.11 
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    33   0.11 
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    33   0.11 
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    29   1.8  
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   3.1  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    27   9.4  

>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +1

Query: 397 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 513
           + A+E  G+G+F  ++LA  G+    E M+++ +SF+ P
Sbjct: 202 DEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGP 240


>09_06_0267 +
           21938300-21938371,21938963-21939235,21940665-21941202,
           21941288-21941490,21941603-21941827
          Length = 436

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 397 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 528
           + A+   G+G+F   +LA  G+   SE M+++ +SF+  S Q +
Sbjct: 35  DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAE 78


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +1

Query: 355 SDPEKGSXSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 528
           ++ E+    E    + A+   G+GRF  ++LA   +   +E M+V+ +SF+ PS + +
Sbjct: 6   AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAE 63


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/42 (30%), Positives = 28/42 (66%)
 Frame = +1

Query: 403 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCD 528
           A+  +G+GR+  ++L+  G+   +E M+++ +SF+ PS Q +
Sbjct: 15  ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLE 56


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 434 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 526
           T CCW +    AL R WT  R RS    H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568


>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  LTNNKEEAHQIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 215
           LT+NKE +  IVT +  AVGS    P  + L  P + +  R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 380 EXEPFSGSDFDFLTEGTTPSSAVLEPGPF 294
           E  P SGS F+FLTE T  S     PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,017
Number of Sequences: 37544
Number of extensions: 389454
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)