Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a23
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        30   0.30 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.91 
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    27   3.7  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   6.4  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.4  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   6.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.5  

>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 275 PSMWNQRSLKTFLQ--RRNSKLLLKRLCQQRVTMKATEKRPSLNWRSLSQLRLAKTSGSL 448
           P  W  + + + L   R+NS++     C Q+ T++  +K    NW  ++ L    T   +
Sbjct: 274 PPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETYTTECHI 333

Query: 449 VIGKKK 466
            I  K+
Sbjct: 334 QIPDKE 339


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 530  SIRCRLLGCTSTPVSEPASDTKLDQCRLWMRPHCQ*SQDTC 652
            ++RCR  G    P   P S   L+ C L   PH    +DTC
Sbjct: 1308 NVRCRCCGIKHLPAHCPLSIVPLEICFLCGTPHFS-GRDTC 1347


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 555 HPNNRHLMERWLRHFVNGGHI 493
           HP+N HL++R+L H     H+
Sbjct: 83  HPSNVHLVDRYLIHRTENQHV 103


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 257 SRGHPLPSMWNQRSLKTFLQRRNSKLLLKR 346
           +R H L S  NQ+    FL+  NSKL+ +R
Sbjct: 33  ARIHQLISQRNQKFQANFLEWENSKLVYRR 62


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 266 HPLPSMWNQRSLKTFLQRRNSKLLLKRLCQQRVTMKATEKRPSLNWRSLSQLRLAKTSGS 445
           H + ++W +    T + R+N   L + +  Q+  +      PS ++  L Q R+   S S
Sbjct: 39  HGMRNLWWEYGGSTVIDRKNGIFLTQDVQNQQGWISTRLPTPSSSFEVLFQFRINSESTS 98

Query: 446 L 448
           L
Sbjct: 99  L 99


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 330 FEFLRWRKVFNERWFHIDGSGCPRE 256
           F+ +  R  F  RWF ++G G PRE
Sbjct: 14  FDVIVARSAFG-RWFRLEGCGHPRE 37


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 355 ATSDYESDGEEAFPELEVPEPIEASKNF 438
           +  DY+ D E   PE + P+  EA K++
Sbjct: 2   SAKDYDFDIESVLPEEKAPQVSEAKKDY 29


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
 Frame = +1

Query: 304 NFPPAQEFEVAPKALVSATSDYESDGEEAFPELEVPEPIEA-SKNFWIVSDRKKEVLLDA 480
           N    Q   +  K+ +    D     EEA P  E  EPI A  K  + VS        + 
Sbjct: 283 NLADLQTATLEQKSAMFTMPDQNYTIEEAPPTAEPWEPISAPKKQEFGVSLPPSLASPEK 342

Query: 481 GALGDVPAVYKVPQPALHQMPVIGVYIDPRVRTGFRYKVRPMQALDAPPLS 633
           G +    +V     PA    PV+     P+V+       +P   ++  P S
Sbjct: 343 GGISSTTSV----SPAAQASPVLSTTTQPKVQKPVPKAFQPKVPMEISPFS 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,432
Number of Sequences: 5004
Number of extensions: 65748
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)