Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29a23
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 31 1.3
01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691 31 1.3
07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015... 30 1.7
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 30 1.7
01_06_0934 - 33167569-33167720,33167820-33168069 29 5.1
12_02_0251 + 16436846-16438237 28 6.7
12_01_0419 - 3316866-3318172,3318249-3318360 28 6.7
01_01_0356 - 2814175-2815401 28 6.7
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 28 8.9
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 28 8.9
01_05_0372 + 21541220-21541457,21541832-21541912,21542027-215420... 28 8.9
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 541 ASDGA-LAEALCKRRAHLPEHLRPVILLFSDH*RSRSFC*PQLAQGPPVQGRPLLRRFHS 365
+SDGA LA L A P L + F D R + P L+ P PLLR HS
Sbjct: 27 SSDGAALASLLAVSSAQAPAPLSDALSAFPDFPRLAADRYPHLSDLLP----PLLRAIHS 82
Query: 364 HSL 356
HSL
Sbjct: 83 HSL 85
>01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691
Length = 611
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +1
Query: 352 SATSDYESDGEEAFPELEVPEPIEASKNFWIVSDRKK-EVLLDAGALGDVPAVYKVPQPA 528
+++ D + + EE F +LEVP P K+ + SD E +DA L V A K +P
Sbjct: 81 ASSGDKQDELEEGFSDLEVP-PEADKKDLDLTSDESSDEDTIDAIGLSQVEADAKPEEPI 139
Query: 529 LHQMPVI--GVYIDPRV 573
+ + + PRV
Sbjct: 140 KKSQSTLLKALLVSPRV 156
>07_03_1749 +
29201116-29201193,29201294-29201371,29201442-29201540,
29202958-29203020,29203101-29203298,29203359-29203472,
29203744-29203806,29203912-29204208,29204774-29204935,
29205061-29205244,29205771-29205820
Length = 461
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 380 EKRPSLNWRSLSQLRLAKTSGSLVIGKKKYYWTQVLWEMCPPFTKCLSQRSIRCRLLG 553
+K SL+WRSLS +R+ + LV +K+ Q+L + K +R I C LLG
Sbjct: 183 QKLDSLSWRSLSGVRVNEQIVQLVPNAQKF---QILLRCIKLWAK---RRGIHCHLLG 234
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +1
Query: 277 IDVEPAFVENFPP-------AQEFEVAPKALVSATSDYESDGEEAFPELEVPEPIEASKN 435
+D+ +++++ PP +Q+F+ P A + DYE + + P +V E N
Sbjct: 257 VDLAKSYMQSLPPWQSPFLGSQKFKTPPSAGLHMY-DYEGKSKYSLPSSKVTTKEEYLSN 315
Query: 436 FWIVSDRKKEVLLDAGALGDVPAVYKVPQ 522
FW + + L G+ G P KV Q
Sbjct: 316 FWENLEESRRSRL--GSSGSSPDASKVRQ 342
>01_06_0934 - 33167569-33167720,33167820-33168069
Length = 133
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 212 VSSRCISMAELASIFP*KA*YDKILKRLRFVRIFRTVDSTN 90
VSS+C+S AE++S P K KI+K F R+ N
Sbjct: 21 VSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRVN 61
>12_02_0251 + 16436846-16438237
Length = 463
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +3
Query: 474 GRRCSGRCARRLQSASASAPSDAGYWGVHRPPCPNRLQI 590
G S R A RL S S + D GVHR PC L +
Sbjct: 356 GCGASARSAPRLLSVSCTRVVDLTTTGVHRSPCSPPLPV 394
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 286 EPAFVENFPPAQEFEVAPKALVSATSDYESDGEE 387
EP + P A E E PK S + DY + GEE
Sbjct: 378 EPPAADETPAAGEPEEQPKPRSSDSEDYSTSGEE 411
>01_01_0356 - 2814175-2815401
Length = 408
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 227 NAFGTLPVPDSRGHPLPSMWNQRSLKTFLQRRNSKLLLKRL 349
+ FG LPVP S PL S + S++ RR +LL RL
Sbjct: 74 STFGFLPVPSSPLRPLASSGSSNSVQPLAARRG--VLLMRL 112
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2
Query: 152 YDKILKRLRFVRIFRTVDSTNLQYNKITE*VNSSQVARLVNRTE 21
+D +LK R RIF S LQ + I SS+VA LV+ ++
Sbjct: 333 WDDVLKDERGWRIFHRTLSNGLQGSMILVTTRSSKVANLVSNSD 376
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 301 ENFPPAQEFEVAPKALVSATSDYESDGEEAFPELEVPEPIEASKNFWIVSD 453
ENF + E+ KA++ A Y G FPE + + ++NFW V+D
Sbjct: 1180 ENFLSSGGKEILIKAVIQAIPVYVM-GLFKFPESVCDDLTKMTRNFWWVAD 1229
>01_05_0372 +
21541220-21541457,21541832-21541912,21542027-21542092,
21543050-21543178,21544619-21544674,21545451-21545732
Length = 283
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 574 RTGFRYKVRPMQALDAPPLSVKPRYLFGGK 663
RT +Y V+ M+ + VKPRY FG +
Sbjct: 105 RTALKYAVKTMREGEEAIFIVKPRYAFGAQ 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,345,197
Number of Sequences: 37544
Number of extensions: 500512
Number of successful extensions: 1536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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