Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a23
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    30   1.5  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    30   1.5  
U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z50874-4|CAD91698.1|  150|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 302 KTFLQRRNSKLLLKRLCQQRVTMKATEKR 388
           K FLQ ++ KL+LKRLC++       +KR
Sbjct: 738 KGFLQLQDEKLILKRLCEKEDEWSGKQKR 766


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 302 KTFLQRRNSKLLLKRLCQQRVTMKATEKR 388
           K FLQ ++ KL+LKRLC++       +KR
Sbjct: 738 KGFLQLQDEKLILKRLCEKEDEWSGKQKR 766


>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 348 KRFRSNFEFLRWRKVFNERWFHIDGSGCPRESGTGKVPKAL 226
           KR RS + F+R  +   ERWFH+    C R   + KV + +
Sbjct: 441 KRGRSIYLFVRAARE-KERWFHLLREACARARNSPKVRRCM 480


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 348 KRFRSNFEFLRWRKVFNERWFHIDGSGCPRESGTGKVPKAL 226
           KR RS + F+R  +   ERWFH+    C R   + KV + +
Sbjct: 490 KRGRSIYLFVRAARE-KERWFHLLREACARARNSPKVRRCM 529


>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 367 YESDGEEAFPELEVPEPIEASKNFWIVSDRKKEVLL 474
           Y  DG E  PE E+PE  E +  FW +  R +  ++
Sbjct: 189 YHCDGAE--PEWEIPEITEITDGFWHLGGRTEHEVM 222


>Z50874-4|CAD91698.1|  150|Caenorhabditis elegans Hypothetical
           protein R10E4.2c protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 421 QLAQGPPVQGRPLLRRFHSHSLLTQAL*EQLRIPALEESF 302
           Q  QGPP       R FH HS+    + ++++ P + +S+
Sbjct: 24  QQQQGPPQHQYQQQRPFHGHSMNNPEMLQRMQYPQVYQSY 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,534
Number of Sequences: 27780
Number of extensions: 386258
Number of successful extensions: 1182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)