Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a23
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.74 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.7  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 235 WNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVAPKALVSATSDYESDGEEAFPELEV-P 411
           W LT  +L  TS+   VEP     +       VA    +S+  +YE    + FP  E  P
Sbjct: 76  WLLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVA----ISSRMEYECSRIDYFPNEEYSP 131

Query: 412 EPIEAS 429
           +P +++
Sbjct: 132 DPSDST 137


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 547 IGVYIDPRVRTGFRYKVRPMQALDAPPLSVKPRYLFGGKALTLQSIG 687
           +G   DP      R KV  ++ L     SV+P+ + G    ++  +G
Sbjct: 551 MGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVG 597


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 312 RKVFNERWFHIDGSGCPRESGTGK 241
           R+   E W H+D S  P +S + +
Sbjct: 61  RRKLEENWIHVDISFLPEKSTSSR 84


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = +2

Query: 497 CPPFTKCLSQRSIRCRLLGCTSTPVSEPASDTKLDQCRLWM 619
           CP   KC + R+     + C+   V E      +D   +++
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMDATEVYL 801


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,100
Number of Sequences: 438
Number of extensions: 4465
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)