Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a09
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    23   4.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    23   5.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   7.3  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    23   7.3  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    23   7.3  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    23   7.3  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    22   9.7  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    22   9.7  

>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 8   PGFAG--WPPFHIGLFATCTEV*LGSGEAISITKVLGGNNIVTFPTVH 145
           P  AG  W  FHIG+F     +  G    + + K      IV   T+H
Sbjct: 74  PSSAGPQWREFHIGMFEIGKPLGKGKFGRVYLAKEKKTGFIVALKTLH 121


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 181 YLLAYYKNRYHIMYSWKSY 125
           Y L+Y +NRY  +  W  +
Sbjct: 274 YFLSYVENRYQSLDCWNKF 292


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 194 RHLILFISILQKQIPYYVQLEKLQ 123
           R L+ FISI +K+IP    L  LQ
Sbjct: 89  RFLLAFISIGEKRIPCSENLALLQ 112


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 85  LSRTQLDLCASGKKAYVERGPSG 17
           L+++ LD C       +E+GP G
Sbjct: 258 LAKSYLDKCGITSLCMIEKGPDG 280


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 184 FYLLAYYKNRYHIMYSWKSYN 122
           +YL  Y ++ Y   Y+W  Y+
Sbjct: 381 YYLAGYLQSMYFTTYTWILYD 401


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 203 FFFRHLILFISILQKQIPYYVQLEKLQCY 117
           F +RH  + +  L KQI  +   E L+ Y
Sbjct: 363 FLYRHYRVCVGFLNKQIYVFSSDEPLKSY 391


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 126 TMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKGGHPAKPG 7
           T+ + PS+  I +  P  +    +V  R       PA+PG
Sbjct: 327 TIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNNQPAQPG 366


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 39 MWKGGHPAKPGF 4
          +W G HP+ P F
Sbjct: 43 LWMGSHPSGPSF 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 926,399
Number of Sequences: 5004
Number of extensions: 15794
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)