Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a09
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832...    29   0.52 
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156...    27   1.6  
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073...    27   2.1  
12_01_1066 - 10998305-10998473,10998759-10998910,10999051-109992...    26   4.8  
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    25   6.4  
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    25   6.4  
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17...    25   8.4  

>05_03_0089 -
           8327044-8327142,8327238-8327306,8327413-8327504,
           8327932-8329042
          Length = 456

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 138 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 28
           +G V+  F     V+EI +  P+ T  + +KRPMW+G
Sbjct: 242 LGAVSFAFAGHNVVLEIQATIPS-TPERPSKRPMWRG 277


>08_01_0185 +
           1558580-1558755,1558848-1559737,1559828-1559919,
           1560018-1560086,1560218-1560316
          Length = 441

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 138 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 28
           +G V   +     V+EI +  P+ T  + +K+PMWKG
Sbjct: 227 LGDVAFAYAGHNVVLEIQATIPS-TPEKPSKKPMWKG 262


>08_02_0379 -
           16506775-16506950,16507037-16507096,16507187-16507375,
           16508131-16508224,16508276-16508300,16508690-16508796,
           16508903-16509021,16510520-16510658
          Length = 302

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 55  LHRGLIGFWRGYFNHKSTRRK*HCNFSNCT*YGIC 159
           LH G++G W  +   K  R K   NF+N T   IC
Sbjct: 110 LHHGILGIWYSHILSKLYRNK---NFNNVTGDVIC 141


>12_01_1066 -
           10998305-10998473,10998759-10998910,10999051-10999209,
           10999334-10999595,10999913-10999975,11000701-11000876
          Length = 326

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 101 KVLGGNNIVTFPTVHNM-VSVFVIC 172
           + +GG++  TFPT HNM +    +C
Sbjct: 130 RAIGGSDDSTFPTHHNMLIGTLFLC 154


>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 159 TDTILCTVGKVTMLFPPSTFVIEI 88
           TD I C +G  +M    STF+I++
Sbjct: 442 TDRIFCAMGSKSMTSEQSTFMIDL 465


>02_04_0039 -
           19118632-19118820,19119018-19119395,19120151-19120345,
           19120425-19120502,19120567-19120752,19120828-19121058,
           19121137-19121490,19121588-19121785,19121869-19122039,
           19122156-19122263,19122362-19122580,19122665-19122871,
           19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 124 NVISS*YFCD*NSLSRTQLDLCASGKKAYVE 32
           N+I S Y+ D ++L    L+L  +G   YVE
Sbjct: 304 NIIGSVYYSDGDTLKDLALELVENGLAKYVE 334


>04_01_0008 -
           173220-173301,173398-173504,173813-173996,176113-176288,
           176612-176683
          Length = 206

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 184 FYLLAYYKNRYHIMYSWKSYNV 119
           ++  A +K  Y I  SWK YNV
Sbjct: 7   WFRYAAHKFEYSISLSWKKYNV 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,229,203
Number of Sequences: 37544
Number of extensions: 114489
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)