Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a07
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   1.6  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   1.6  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   2.8  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   2.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   3.7  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    24   8.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    24   8.5  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 232 HCGTSHGPTWS---TKSWTSGFSQSGSAI 155
           + GT H P+WS   + +W +G S  G AI
Sbjct: 45  YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 135 NVHLSGIFSLENVAR*RNRQLPQ 67
           N+H+SGI +LENV   +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 277 HLPVFVFRTLGRSQ 236
           H+PV+VF++LG SQ
Sbjct: 113 HVPVYVFKSLGDSQ 126


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 344 QTL*FYLHV*IYTILLTFRFRYTFASFRVPDIRPVAEA 231
           ++L F   V I  ++L  R+RY     R+P   P+ EA
Sbjct: 65  KSLLFLFFVSICVVILVVRYRYLNKYARLPHEAPIKEA 102


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 333  ILFTCIDLHNFINIQIPVHICQFSCS 256
            +LF  I+ ++   + IP++ICQ S S
Sbjct: 1059 LLFEAIEQNSLSKVMIPLNICQKSFS 1084


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 224 YVAWAHVVNEIVDFGI 177
           ++AW H + E V FGI
Sbjct: 271 FLAWEHSLTEAVQFGI 286


>SPBC56F2.11 |met6||homoserine
          O-acetyltransferase|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 489

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 83 TDSCHNKQQYNK 48
          TDSCH  QQ NK
Sbjct: 13 TDSCHPSQQENK 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,393
Number of Sequences: 5004
Number of extensions: 33067
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)